NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10031560

Scaffold Ga0272433_10031560


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10031560 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4424
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028367Metagenome191Y
F033265Metagenome177Y
F048017Metagenome148Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100315602F028367GAGLCKLDEILSKENYFEKSFLIDAHLISQNQFFSLRSLIDSDSAAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMQNDIIVFSNQLNTSISIFLIFLNSKHSSXL
Ga0272433_100315604F048017N/AMSLANVSESAQRLEDCFQTILILDRVDVLLVEPKANLYQRVHMINQMNELCNEYRQAMNENKLKFHITKLKNCEIIDSVLFRKGLLXVFENMHTKLLQEVHDQSSISHLDNKQIIDLVQRFYY
Ga0272433_100315605F033265GAGMTSQSKKXFESCYETSIDCMIYSVLLFRTKTFNSYQLCERVFASDXESQLVYSQSIIRRSTIRRNESIKTLNANLESTAITCRTTESNEYLXXNSATILISSRSSQXSLSTSIKNFTLEXVSIQIRLTTKQLVNDLKLEKQMILSFKXKSYXASIIINXKRRSXSSKFRSINIDETSSIK
Ga0272433_100315606F087978N/AMFSSKLLRSYSKDSLSEQHAELLRLIIINDDDDEHXEIDDILNFRRYRDXIQYKIKXKGLDRDNEXYYVDKDEFNDFEKVLNEFHALYSRKSR
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