NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10035136

Scaffold Ga0272433_10035136


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10035136 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4087
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044227Metagenome154Y
F048018Metagenome148Y
F094624Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100351361F094624N/ALINLSQNLCLDFKSSESLFKNFTFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNFSCHSCFKYFVEDEVRLNACNLNIAHFVIKLNDCNVNLCKIKHVFKNNSLIIELNLSAFMKIHSIFHVILSNHIISDFLSNQHQKS
Ga0272433_100351363F048018GAGMIRRSSLFELSIYFLSXKYKXFSCSLHLTRKILLXCYASLQSISIIXAVNLSLIXTYFHNVXVRMSAESLSRFRISXFNXDLTSLTLNSSIFKFIKVKICKNAEIIKNRCNXIESKVMICDXSFMTLMLKTSKARFSTILKFKT
Ga0272433_100351365F044227N/AMKSSDDEACIHALLKLITFAIKNATKCXLLKLLNNCHHHEESQSSSKDDDENEALEAI
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