NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10061010

Scaffold Ga0272433_10061010


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10061010 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2725
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F087980Metagenome109Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100610102F001951N/AMMIMTKLKFIDSSRNEKEKDEDTVEMIVTKVMIFEFKKLLINAEMFLTLMNEMMMKMK
Ga0272433_100610103F087980N/AMKSSYNLLIDDERAVEQFIQSMIENSVKIFHIMHELQNQVQQHNVIISFSFIVFSSSIYIKLNSQFLVMITQIITQILNNQSSFVIHLFANSVTVFITFKFEKLLDISEYEKNKDQLNA
Ga0272433_100610104F096306GAGMYDNYAVDSLIVDNDSNEEKSCKDNSELQASMILFNITILIATNVKIVFVESNDK
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Institute for Fundamental Biomedical Research
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