NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10075814

Scaffold Ga0272433_10075814


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10075814 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2316
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F008735Metagenome328Y
F021026Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100758141F008735N/AMIIVHVHTLYQTLLFCIQLIFVSFIFRYVEKLLEFKSDEDSDRVCKEMNDKRRLIVQDLCDNLSYHHKKLRIQLYINXRTENDEXNDNIMLSNLILKLLHCIKDLDXIFNHTLSELFNSMLIIDQEIVRXLHLSERITRRDFNIXKRCRKCKSFVMSKTELD
Ga0272433_100758142F001951N/AMIITKLRFIDSSRNEREKNEDTVEITVTKVMIFELKELLIDAEMFLTLTNEMMMKIK
Ga0272433_100758143F021026N/AMIVFCILRQAQSKVLTFALIDSEVSTYVFMNKFFAQQHHLLLHQLTHSRRLXEFDDQVTLIDDIIHVVEITMILDKHIKRLFFYVIELSQYLIIMNLSXLCHHVINVNFEHNILILSFFFCLDHCCQSLIKIYDLNQQEENFLLEVNKVTSLQSCF
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