NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272426_1003186

Scaffold Ga0272426_1003186


Overview

Basic Information
Taxon OID3300031451 Open in IMG/M
Scaffold IDGa0272426_1003186 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20613
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.57Long. (o)161.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036995Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272426_10031869F036995N/AMTQTARDDRERDSTPYEWTRDGDPEGLERAIDMRPLAPGLDQGDREVTYYTREPDGYGPDDYRWQPITDPAEIATIEGALAQGIDPPYAVWVDQAPAALAPGDLTPTEEGATVYAWEQTGPAVGDGQFYEVTDPVVIAAYAEAHPAQEAVEIANPADDYEAAAAPDRALYNAQIDALVATGATWLEVEREGDSFALGRYAAGPLERDTNGWEPVRVADGPDDGPRGTAYPDEATAHQAALAHNGADLAGARVDLDPAPVDALDRDLTPALDL
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