NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272422_1017209

Scaffold Ga0272422_1017209


Overview

Basic Information
Taxon OID3300031452 Open in IMG/M
Scaffold IDGa0272422_1017209 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5415
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter aplysinae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029944Metagenome186Y
F036995Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272422_10172092F036995AGGAGMTNAARDDRDITLYDWTRVSGPEGPALAVETTPLDPGLDQEVTYYTREPDGYGPDDVRWQAITDPAEIATIERALARGSDPPYEVWVDQVPAARDPDRLTPAEEETPVYAWEQTGPAVGEGQLYEITDPVVLAAYEEAHLAHGTIEIITPADFYDAAWAADAARATDPALYDAQIEALVARGDPWLEIEHAGDGVALGRYDAGPIERDTNGWEPVRVGDGPDNGFTRNVYPDEATARQVAIAYNGADLAGTDLTLNPAPGAALDRDLTPAIDL
Ga0272422_10172093F029944GGAGGMDHGRGDALAYTVDSQGRVLCVWEATAVDPATARADAAPPVALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDTCRAATRPPATRTPHTRVKGAEAR
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