NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000007

Scaffold Ga0272425_1000007


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000007 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)300946
Total Scaffold Genes295 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (24.41%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F007840Metagenome343Y
F008668Metagenome329Y
F010214Metagenome306Y
F021216Metagenome219Y
F025887Metagenome199Y
F028978Metagenome189Y
F033265Metagenome177Y
F036504Metagenome169Y
F042102Metagenome158Y
F057011Metagenome136Y
F064254Metagenome128Y
F086375Metagenome110Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100000711F008668N/AMTLFYFNKNFHLQMSFNSNMTDYETIHECFKARKANNIIIXMKELLIFNHQQLKKMKQIIKVQINKHKQNVIYKVNN
Ga0272425_1000007116F010214GAGVLFVYDASSLLCSSLMIFYTTMSRFDSXFEDERCFLCTHDARDCNVRRAAFSCSMIVIHYAEKYVMKERCTRXKDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRLQSFDVXLXLMKENAFXSFSXALDFSRRQIYDLTSSKEDELKLSQYISVIDKSLLLQAL
Ga0272425_1000007117F064254N/AMLLIFKSFLKFMMFSLHCIIFHSIFHFKHVNRMCLINIQSLSYLHVIVATSSTYLLYKNXLKSIFLMCSCVNNALXDFAXFLCSHKCXCVIFDVRYXKXAVLNLSFQTILHVCLICFCMSVNLIITSMHXCSVSNKDKSCVSSIILFITSFSSTSAYFVT
Ga0272425_1000007129F001253GAGVTFIKDVMKDVLISSTTSSSDDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYLFIDELIAQNVCDHLQIKSLPLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFVFMLIT
Ga0272425_1000007132F028978N/AMKIVDLKEKENDESIYQLILEANKINENCILLHEVVLKDKAQYKDTKLRNCQVQNEILY
Ga0272425_1000007134F021216N/AMKSRMKSNAMKREHHKLKKALRNHERSDDDHSNDTLNEHTESISSCDVIKESDEKVLKICLKXVR
Ga0272425_1000007158F007840N/AMIDAIERQNNTREFIESTARLVELLDDLQLIKYASFISINRISDKEPSLIARESNRSRKSINSQIKQQKRLHLLLLSIALRSISFF
Ga0272425_1000007170F033265N/AMFSVIEKTMTSQSKKRFESCYETFIDCMIYSVLLFRTETLNSYQLCEKVFASDXESQLVYSQSIILKSTINXNESIKTLNANLEFTAITCKMTESNEYLXXNSATIQIFSQSLQXLSSTSIKNFTLEXVSIQIQXTTKQLVNNLKLEKQMILSFKXKSYXTSIVNNXKRRSXSLKFKSINIDEMSHMK
Ga0272425_1000007177F042102N/AMTRSTESESVSIARYDFXNVRRQSLLSQNXTASEEEDTNASSNTEEENTNALLFDHEMIKISISTELNAXINIHEADDIVIFIKYMYQQHDIKIKTHNDMIQMLEDVNETNITLKATQTCLQKEMRNKNVIIHHLETASSXQSTSISEDRFSKSIKLLNSSLFEDSTQNVDNXLSXMQNKLKINKNHFSIKELKIAYIKSXVNETAVKHIATQMRNMITNSFLEAEEILSIINKMYNDLNHHHTTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLDDLQHKISSDFQQATLNERIMNLNEFVNICMQVDVRLTELNAXLIIKVSMISAAYSVASTSSARSTLSVSAXKKLRRLNLDSIQKELFKKELCFKCKKSEHKAYDCLETTQVHEIAANSKNDLSC
Ga0272425_100000738F094625N/AMKSSYNLSINDEHAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIISFSFIVLNSSIYIKLNSQSLVIIFQIIAQILNNQSLLVVHSSANFVAVLTFIKFEKLLNIFEYEKDKDQLNVXEQNLIQCMNVNNDHYFSHRVKIIYVESRLIIDKKTHNLMNQY
Ga0272425_100000742F036504N/AMPRQDTQSAEQXVNHEEASTISVSICCSEVEXSSTFEAHSQRESSTLSDNENNHHKFIKLSNSLIFIETDDSIXETXNIKIANKLNVNVNHYSTEKIHIVYVIFRLEDDADQQIYAKHHVDAFSLYQLLSKLLKHLKEIYEDQNLIQKCHCKYIALKQLNKLFSSFYSEFTRIFSFLNYDNITLMNDIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQRTVKLIAASKKHFVSSSTSASVSITSYVQLITFFTLESEXSRMSIICFNCKVLNHFSKNCSQLKTSTSTSCAFISCLNEIIMSKEEKKLFTEKSKNKAKN
Ga0272425_100000745F033265N/AMFSVIKETMTSQSKKXFESCYETFIDCMIYSVLLFQTETLNSYQLCEKVFASDXESQLVYSQSIILRSMINQNESIKTLNANLEFTAITCRMTESNEYLXXNSATISISSQSLQXFSFTSIKNFNFEXVSIQIQLITKQLVNDLKLEKQMILSFKXKSYXTLIVNNXKRRSXSSKFKSINIDETSHMK
Ga0272425_10000075F057011N/AMSLIDLHXTLNQILIQKTSYLFQNHXKDKDYIFVQLNXSSIKKNYFEKSFLINASLIFQSNSFNLRSLINSNFIIYTLIYNKLVNKVCQKLEIQFILLAKEKLIQEYNEKLARKTIIHKILLNLTIKSHKKLTVSMLIIAIKYHEVILSKLXMNKNEILLNMKHNTIIFSDQLNISISIFSISLNIKHSSXLQSTFTSLMTYNNASKILKHSVLIIQKKSFLIQNINVVSF
Ga0272425_100000770F086375N/AMFTLFVNSKIIASXNCGENXFNEIKEHYKRQNNDRMIIFKXLHKLRQFNVXKEVNEIDKAAMKDNVKDEVEQEXKNKDIHDNAFQ
Ga0272425_100000774F025887N/AMSDDSFDFKSFTADIILSSLEKIFRFFALIDTEVTDMIFIDKSLMSELCECFDIQSISLSKSKLIRSYDEISDQKEIKFX
Ga0272425_100000775F042102AGAAGVSIAHYNLQNVKRESLLPQNXTALEEEDMNASLNTEEKNTNALLFDHEMIKISINTELNAXINTHEADDIVAFIKYICQQHNIEIKTHNDMIQMLENVNEINITLKITQTRLQKENRNKNVIIHYLEAASSXQSTSISEDQSLKSIKLLDSSLFKNSLQNVDNXLSRMXNKLKTNKNHFSIEELKIVYIESRVSKAAIKHIASRMRNTFLNLFLEVEEVLSIINKMYDDLNHHHTTQQQYLKLYQNKIFFHEFXMKFQRFNAELKYNNETLLNNLQQKISSDLQXATLNKXITNLNEFVDICMQVDVRLTELNARSVVKASATQAARSAVSTSTTQLTSSVSSXKKLRRSKLNFI
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