Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000026 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000026 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	243368
Total Scaffold Genes	287 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	141 (49.13%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (40.00%)
Associated Families	15

Scaffold Components

Scaffold Length (bps)

243368

Total Scaffold Genes

287 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

141 (49.13%)

Novel Protein Genes

20 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F019584	Metagenome	228	Y
F025887	Metagenome	199	Y
F036035	Metagenome	170	Y
F036036	Metagenome	170	Y
F041516	Metagenome	159	Y
F044226	Metagenome	154	Y
F058565	Metagenome	134	Y
F061402	Metagenome	131	Y
F094626	Metagenome	105	Y
F102180	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000026118	F044226	GAG	MMKFSDNFNTFSTISMISFYFNKNFHSRMSFNSDMTDYKMIHQRIEVRKIDDIVI
Ga0272425_1000026121	F019584	GAG	MIKAQTTKQIIFVEESVKATCRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKFDHTSKECLNRSFRINALNDEFNHSSNFDSEFDSKN
Ga0272425_1000026124	F094626	GAG	MFLNERNIITARLFKKLNDKMLDSFQITDSVDSFYKLKLSKTMHIHDVFHSELLHSAVDDSLSDQKNEFSKSIVVNDEDE
Ga0272425_1000026125	F036036	N/A	MFVSLIYHLFSCFDQSFASEDQCLINVIEYIFDSNNLQTFADAFILNDVEVEAHTRVKVLVYEEESQEDD
Ga0272425_1000026126	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLLKERHYISCITDDEDITVEKTVEMLLQ
Ga0272425_1000026131	F000597	N/A	MSDDSFASESLTTKCVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTAFMLITRLN
Ga0272425_1000026132	F003820	N/A	MKLFSYLDYDDCILMNDFQNKINNHLQNALSVCFEDFASLHYLKIFLQDVNNKQRVNYQLRSQLCIVTVKVTVVSDKCIATSLSVMTLIIDYVKSTLSSISESVRLFIICYTCKISSHLFKNCSQNKINTSASCAFTLRLHEIIISKNKKNEKMFSFEDSEAKN
Ga0272425_1000026138	F006206	N/A	LCSQIEVLLKENYFEKLFLINASFISQSNSFSLRSLIDSDFVIYMLIHDKLVDKVCQKLEIQFILLAKEKLIRDYDEKLARKTITHKILFNLTIKSHKKLTMSMLITDIEHHEVILSKL
Ga0272425_1000026143	F036035	N/A	MKDRMKDDAMQRKHHKLEKASRNHEHDNSDHSNDTLDKHTESISDCDIIEESNERERK
Ga0272425_1000026144	F102180	GAG	LTLIITHHDELKELVAKAKHLANIATVNQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIMHESI
Ga0272425_1000026152	F008668	GAG	MSFNSNTTDYKITYKRLEARKVDDIIIQMKELLIFDHQQLKKMKQIIEAQINKHRRNVIYEVND
Ga0272425_1000026154	F041516	N/A	MIQKAIHIHEAYNLSLRDHKIIHEKKNLSNIEKMLNMLKESILVEDFNLHHFT
Ga0272425_1000026161	F058565	GAG	MNCTNCSNAGSKTIASNVDSSQENRDAELKHLHDDKENVANIIDLLIKISTLEKEKNKDH
Ga0272425_1000026162	F102180	GAG	LTLVIIHHDELKELVAKAKHFANIATVNQECHEKIYKVYNDNQTSLKTVKAMILTKDQTRLQQVQIMHESI
Ga0272425_1000026163	F036035	N/A	MKDRMKDDAMQRKHHKLEKASKNHEHDNSDHSNDTFNKHTESILNCDIIEESNKRERK
Ga0272425_100002619	F061402	N/A	MTEFVDNNAISSSIEQSAFFLNKNFHSRMSFNSNSTEYEITQAKIEASKAKNIFKHMK
Ga0272425_100002626	F025887	N/A	MSDDLFDFKSFIVDIILNSLEKIFRFLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKLI
Ga0272425_100002632	F006206	N/A	LCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLCSLIDSDSVAHTLIHANLVNKVCEKLEIQFISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL
Ga0272425_100002635	F008668	GAG	MIKFSDNFNIFLIISMTSFYFNKDFHPQMSFDSDTTDYEITCERLKARKADDIFIQMKELLSFDHQQLKKTKLIIEAQINKHRRDVIYEIND
Ga0272425_100002639	F025887	N/A	VTESDILIFCFISMSDDSFDFKSFTVDIILSNLEKIFRFFALINIEVIYMTFIDESLMSELCERFDIQSILLSKSKLI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000026

Overview

Ecosystem & Geography

Associated Families

Sequences