NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272425_1000039

Scaffold Ga0272425_1000039


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000039 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)218656
Total Scaffold Genes227 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (31.72%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F003820Metagenome466Y
F008169Metagenome337Y
F011463Metagenome290Y
F021452Metagenome218Y
F028367Metagenome191Y
F028667Metagenome190Y
F036994Metagenome168Y
F061400Metagenome131Y
F065268Metagenome127Y
F081945Metagenome113Y
F083460Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_1000039112F008169N/AMSSRSLTEEHFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIILLMFYEIXKARSLVLDEETDQLYELGKQQEDEIKELKTRLQAKENTSSDFIYFERSRSQKIPDSSLFTDEKNSTXKNWYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIIDDLLKELTQLFNDLNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHKKQLIADLKDKIHSHLRFIXVDQLVQPDFLKEIRFYLIHLNNDQRVIRKIKNKIKRVNDLSKTIFHRATVVTQSVDHSKSDQLKSRDAILTNVKEADILVESCFICHKSDHSFKECFDRPTRINAVNNEYDRFDFNSNFDSKN
Ga0272425_1000039141F003820N/AMKLFSYLNYDDCTLMNDLQNKINNRLQNALSICFKDFASLHHLKIFLQDVNNKQQVNYQLHSQLRTVTVKVTVVSDKHAATSLSMMTLIINYVKSIFFLIFKSARSSIICYTCKISSHLFKNCFQNKINTSAFHAYTFRLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272425_1000039149F028667N/AMTHDSESVESRTARLLRSTANKRVSLISVDASARSQNVAISXNINTSQQLRQXAIDQSDEIIKMLVELRDQRDMTLKLNEQXIDVQVDHIKRLDELEINQMTINTQEETIIDLREKVLSLKKRQRSANQLQPRQSTKPLSRQSIKNHTRRESFTLFDNEHHKFFKFSNSFIFTDEDESTXDSXRVKINDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAQHRHNASHSYILIYELFEHLKEIYDDQNKNRKCCRKYNALRQAEKSFNVFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNALLICLKDFTTLHCLKSFLQSMNNKQQVNYQLXSERCMIIVKVIITPEKRATLLSAMMTSIIEYVKSTIFSTSKSVRSSIVCYICKISSHLSKNCFQNKINTSASQAFISRLHEIVISKNKENEKISSFEDSEAKN
Ga0272425_1000039158F008169N/AMSSRSLTEERFEEFRNRFSQISDADSSKSRTESSSAASFIHEDDESFAETVILFVFYEIXKARSLALDEETDRLYELNKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSIXENXYGKIQDKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIVDDLLKELAQLFDDLNKKVNFRREYYNLIQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFVXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVDDLSKTIFHRVTVVTQSVDHSKSDQLKSRDAVLTSVKEADILVESCFICHKSGHSSKECLDRPTRINAVNNEYDCFDFDSNFDSKN
Ga0272425_1000039196F081945N/AMLSRSFTKECFKEFQNRFSQTSDADSSKSSSAASFIHEDDESFVEKIILFMFYEIXKT
Ga0272425_1000039197F008169AGAAGLKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSIXKNXYGKIQNKLEINVDLFSNEXVKLSYIHSRLFNDAAEITQAXREHDCVNFYKIINDLLKELAQLFDDLNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLNYHEKQLIIDLKDKINSRLXFIXVNQLVQPDSLKEIRFYLIHLNNNQRVIXKIKNKLKRINDLSKTIFHKATIITQSVDHLKSNQLKSHDVILTNVKKADVLAETCFICHKSDHSFKECLD
Ga0272425_1000039202F011463N/AMKLIIKVQINKHKXNIIYEVNDXVXLSFRNIKTTRLCKDLKDKQLDFYQITVKVSIFYHLHLSISMKHLHSMFSSKLLQSYSEDSLSKQHSESLRLITIENDEHXKINNTLNFRRYXGRIQYKVKXTNLNRNDEXYYVDKEKFDDSEKVLNKFHKLYSNKSR
Ga0272425_1000039206F028367N/AMLXSIYQNQCSEQXIXSFQIRFQFEFRFKKLVISSKVIKEIKIISLCKLDEILSEENYFEKSFLINAHLISQNQFFCLCSLIDSDLVTHTLIHVNLVNKVCKKLEIQSISLIKEKLIKDYDEKISKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILNKLXMNKNEILLNMQNDVIVFSN
Ga0272425_1000039219F021452N/AMSDDSFNFKSFTVDVILSSLEKIFRFLILINIEVINITFIDESLMSKLCECFDIQSILLSKSKLIQSYDEISDQKSITYALYTLIMIQEHKNEMMSLLITCLDQHKLIIENL
Ga0272425_1000039222F065268N/AMTRSTELESVSIACYELXNAKIESLLPQNXTASEEEDTNASLNTEEKNTNALLFDHEMIKISISTELNAXISTHEADNLITFIKYIC
Ga0272425_1000039224F061400N/AMNLNSEKTIIKAXDIYYKEEDEDNMIDESDDSFKTNLQNVLRSINV
Ga0272425_1000039225F002432N/AMTFFYFNKEFHPRMSFDSDTIDYETTHERLEARKADDIVIRMKELLSFDRQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLRLSVSMKHLHSMFSSKLLRPYSEDSLSEQHAESFRLIIIDDDNNEHXKIDDILNFRRYRGRIQYKIKXKDLDRDNEXYYVDKDEFDDFEKVLNEFHALYSRKSR
Ga0272425_100003928F003820N/AMKLFNYLDYDNCTLINDLQNKINNHLQNALSVCFKDFASLYCLKIFLQDVNNKQRVNYQLRSQLRTVTVKVTVVSDKCVATSLSVMTLIINYVKFILFSISESVRSFIICYTCKTLSHLFKNCSQNKVNTSASCAFTLCLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272425_100003936F083460GAGMQLQMKSSDSQAYSDALFELNTSSVEYATRRRLHELLNHRLNHEESQGNSENDDENEAAEAV
Ga0272425_10000395F036994AGCAGGMWDRMAIEAGSLVDLLIEEVGYRLAIEAGSLVAREREVDRFTGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.