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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000102 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 161417 |
| Total Scaffold Genes | 184 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (20.65%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F002432 | Metagenome | 559 | Y |
| F009377 | Metagenome | 318 | Y |
| F035571 | Metagenome | 171 | Y |
| F037509 | Metagenome | 167 | Y |
| F044227 | Metagenome | 154 | Y |
| F064254 | Metagenome | 128 | Y |
| F070712 | Metagenome | 122 | Y |
| F075493 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_1000102107 | F002432 | N/A | MXKSLCKRLRITASLFTVYHFKINDQLKXVNQDVECELRIYCNYMQNDXVKXISMMKFSNNFNIFLITSMIFFYFNKEFHSRMSFNSDTTDYEMTYEXLEARKADDIIIXMKELLSFNHQQLKKTKLIIEVQINKHKXNIIYEVNDXVXLSFRNIKTMKLCKDLKNKQLNLYQITAKVSIFYHLHLSVSMKHLHLMFSLKLLQSYSEDFLSEQHSESLRSITIKDDEHXKINDILNFRRY |
| Ga0272425_100010211 | F035571 | N/A | MYVSVSRVSMFTLLNASATXCKVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIALHVKTLRQLSVSILVTXFIFICXRCASHCSFMFSCIFKTCTSDFNLITALSIYMLVIMLNLFDFLVKCVSSYFSDANVVSXVQAHFVQMSCALLSVLQISSVNLL |
| Ga0272425_1000102113 | F037509 | N/A | MILISLLIQIHLTDNETRIKKFMYLMIDNIKRQNNIKKSIKSTRTYNHMIARESIAQSVASVQINX |
| Ga0272425_1000102116 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAEKXDSLNFYRKIEVTILVDHSKLCDVILTNVKNINLQAEICFICHKSNHTSKECFNXLKVNALKDDEFDXFTLNSEFNSDSKN |
| Ga0272425_100010212 | F075493 | N/A | MQSVQAVHEYMLRHLMTSFAVAXXAIRAXNVSRVQISIQIYAFDSDVHCKSAFCFLKIITHLYCLIAQMQPLCXDYVDICNAFSVLFPSLISLIFVILCYCDAIACXNHCEEESASSASQLYLCIFLNEDIQKYYFLDDEXVRNDAINFRQTSAY |
| Ga0272425_1000102125 | F009377 | AGAAG | VSSDTEEKNMNVLLFDHEMIKISISTELNAXISTHEADDIIVFIKYICQQHDIEIKTHNDMIQMLEDVNEINIMLKATQTRLQKEMRNKNVIIHHLETASSRQSTSISENRFSKSIKLFNSLLFEDSTQNVDNXLSXMQNKLKINKNHFSIEELKIAYIESRVDETAIKHIATRMRNMITNSFLEAEKILSIINKMYDDLNHHHMTQRQYLKLYQNKIFFHEF |
| Ga0272425_1000102128 | F044227 | N/A | MQLRMKSSDDEACTHALLELIAFVIKNATRCXLLKLLNNHHHHEESQSSSENDDENEALEAI |
| Ga0272425_1000102129 | F064254 | N/A | MQELYEFVSFLFSLSFIXLFNDVTSXNXFSMLVESIIQIIIVAALMISKSFLKFVMFSSHCIAFHFTFHLKHVNRTCLINIQSLSYLHIVVVTLNTHLSCKNXLKSIFFMHSCVNNALXDFAXFLCSHRCXCVISDVKYXKXAAFEFLFSNYSSCLFDLFLYEHQSCYHFNALTLSQX |
| Ga0272425_1000102183 | F001253 | GAG | VTFIKDAMKDVLISSTISSSDDFFASKSLTTECVLFSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHTIDTASMLIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |