Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000104 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000104 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	160940
Total Scaffold Genes	169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (20.12%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

160940

Total Scaffold Genes

169 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (20.12%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (21.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F021216	Metagenome	219	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F051591	Metagenome	143	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000104104	F010214	GAG	MKVSVLFDYDASSLLCSSLTIFYTTMFRFDLQFKDERRFLYIRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSINMQSQSFDVXLXSMKENAFXSFSXALDFPCE
Ga0272425_100010411	F036035	N/A	MKDDAMQREHHELEKASRNHERDDSNHSNDILNKHTESISDCNIIKESDEREKE
Ga0272425_1000104115	F051591	N/A	MLDAIALYLMYRSSRVISLRIVTTDLNLLPCASRKGKTDSNLIRNVVLLXNNVVFYEIFKRKRVXFRFLHQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXAQKISIFDFXLATQSSVKLLSRIRACFDHIIVLYNLSIDLIYHMLQ
Ga0272425_1000104119	F051591	N/A	MLDAIALYLMYQSNHVISLKIVTTDLDLLSYASRKGKTDSDLIRNTVLLXNNVVLYAIFEHKRVXFXFLHQYAVFCAVLKSINDFFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFXPAXAXKFSIFDFXLATQSFVKLLSRMRACFDHIIVLYNLLINLIYHMLX
Ga0272425_1000104131	F036035	N/A	MKDRTKDDAMXKEHHELKKAFRNHEHDNNNHSNDTFDKHTKSISDCNVIEELNERERK
Ga0272425_1000104133	F051591	N/A	MLDTIALYLMYRSSCIISLRIITTDLDLLSCASRKCKTNSDLIRNAVLLXNNVVFCAIFKHKRVXFRFLHQYAVFCAVLKSIDDLFFSCEFTFQFINQITVXIDDSFFCVDELSFRRXFXSAXAQKISIFDFXLAMQSSVKLLSXIRTCFDHMIVLYNLLINLIYHMLX
Ga0272425_1000104159	F021216	N/A	MKSRIKSNAMRKEHHELEKALKNHERSDNDHLNNIFNKHTESISSCDVIEESNERKKK
Ga0272425_1000104162	F038008	GAG	MNQSHFYTMIFXSKSLKIVIVANKKMSIKQHNLDTFTLKQRVYSNDNDSKDNVTAIAMRMNXKLDKRLKRLTLIITYHDELKELVARMKHLADVVTVNQECHKKIYKVYSDSQTFLKTVKAMISTKD
Ga0272425_10001043	F051591	N/A	VKIDHKTDSTSRKDKTDSDLIRNAVLLXNNVVLCAIFKHKRVXFQFLCQYAVFCAVLNLIDDLFFSCEFALQFINQITVXIDDSFFCVDKLSFRCRFXSAXAXKFSIFDFXLAMQSSVKLLSQMRACFDCTIVLYNLSINLIYHIRFVCDMHVYHEXX
Ga0272425_100010431	F036035	N/A	MKDRTKDDATXREYHRFEKASRNHERDDSNHLNDTLNKHTESISNCDVIKKSDKRERK
Ga0272425_10001049	F038008	N/A	MNXNHLYIMILXSKSLKIIIVANKKMSIKQHNLDTIALKQRVYLNDNNSRNDVTAITMKMNXKLNKRLKKLTLIITYYDELKELVMKMKHLADVVTVNQECHERIYKVYNDNQTSLKTVKVMISTKEQTRL
Ga0272425_100010490	F038008	N/A	MKMNXSYFYTAILXSESLKIIIVANKKMSIKQHNLNMFTLKQRVYSNDSDSRNDVTAIMMRMNXELNKRLRRSTLVITYHDELKELVAKMKHLANVATVNQECHEKIYKVYSDSQTSLKTVKVMTSTKDQTRL
Ga0272425_100010498	F010214	GAG	VSVLFVYDASSLLCSSLTIFYTTMSRFDSRFEDERCFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQLQSFDVXLXSMKENAFXSFSXTLDFSRRQIYDLMSSKEDEFKSSQYISVIDESLLLRAL
Ga0272425_100010499	F011463	N/A	LKKTKQIIKDQINKHKXDVIYKINDXVXLSFRNVKTMRSCKDLKDKQLEFYQIMIKVEIFYHLHLSVSMKQLHSMFSSKLLHSYFNDLLSEQHSESFRLLTIKNDEHXKINDILNFRCYQDXIQYKVKXTELNXNDEXYYADKEKFEDFEEILIKFHKLYSNKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000104

Overview

Ecosystem & Geography

Associated Families

Sequences