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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000119 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 156921 |
| Total Scaffold Genes | 182 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (41.21%) |
| Novel Protein Genes | 14 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (7.14%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001253 | Metagenome | 736 | Y |
| F006206 | Metagenome | 378 | Y |
| F013598 | Metagenome | 269 | Y |
| F018839 | Metagenome | 232 | Y |
| F025887 | Metagenome | 199 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| F048019 | Metagenome | 148 | Y |
| F061401 | Metagenome | 131 | Y |
| F061402 | Metagenome | 131 | Y |
| F065269 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100011910 | F061402 | N/A | MIEFINNNAILSLIEQSMFFLNKSFHSHMSFDSNSIKYEITRAKIEAGKAENIFKHMK |
| Ga0272425_100011915 | F025887 | N/A | MSDDSFDFKSFTVDIILSSLEKIFRSFALINTEVIDMTFIDESLMSKLCECFDIQSISLSKSKSN |
| Ga0272425_100011918 | F048019 | N/A | VNEHAFELFFAQAFAKALQDESTVYALVMINIIEELIIEHQVKAMNNVMSCITNALETQTLLIELKEYKDVFLTESVNKLLLHEDHDYAIEITAKSSYKSLYNLLNTELATLRQYLDDVLAKE |
| Ga0272425_100011924 | F044226 | N/A | MMKFSDNFNIFSIISMISFYFNKDFHSRMSFDSDTIDYKITRERLKARKADDIVI |
| Ga0272425_100011928 | F006206 | GAG | LCKLDEILSEENYFEKLFLIDVFLNSQNRSFSLCSLIDSDSVAHMLIHANLVNRVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILLNFIIESHKKLTVSMLIADIDHHEIILSKL |
| Ga0272425_100011929 | F061401 | N/A | LNNDQRVIQEIKNKVNLIKCIDDLSKIIFHKVVVTQSVNHSKSDHLKSCDAILTSVKEADVLVETCFICHKLDHSFKECSDQPTKINAVNNEYDCFKFDFDSNFDSKN |
| Ga0272425_100011942 | F013598 | N/A | MNFIINLSDSYDYNAILTIICRLSKERHYISCIIDDENITVEKTAEMLLQ |
| Ga0272425_100011945 | F065269 | N/A | MSIAHYDFQNVRRESLLSQNRTASEEEDTNASSDTEEKNMNMLFFNHEMIKISISTELNA |
| Ga0272425_100011948 | F025887 | N/A | MSDNSFDFKSFTIDVILSSLEKIFRFFALIDTEVTDMTFINESLMSELCERFDIQSISLSKSKLI |
| Ga0272425_100011953 | F061402 | N/A | MIEFVDNNAISLSIEQSMFFLNKNFHSHMSFDLNLIKYEITQAEIEADKAENIFKHMK |
| Ga0272425_100011955 | F013598 | N/A | MNFITNLFDSSEYNAILMIICRLSKKRHYISCITDDEDITVEKTAEMLI |
| Ga0272425_100011959 | F018839 | N/A | MMIVKVVTFNHLTSDLYAAVSIIAMFIKLKDEAKLTELNDFMILLNEDDFSLSQVMTEEINLFSI |
| Ga0272425_100011961 | F001253 | N/A | VTFIKDVMKDVLISSTMSSSDDLFASKSLTIKCVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSFIKLKSIRKFNDYYAKKLITHAIYSNLTVQDHMKRFVFMLITRL |
| Ga0272425_10001199 | F036036 | N/A | MLVSLIHHLLSCFDQSFASEDQCLIHVIEYIFDSSNLQTFANAFILDDVRVEAHMRMKVVVHEEESQENN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |