Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000128 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000128 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	151095
Total Scaffold Genes	162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (23.46%)
Novel Protein Genes	18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Associated Families	18

Scaffold Components

Scaffold Length (bps)

151095

Total Scaffold Genes

162 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (23.46%)

Novel Protein Genes

18 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F028978	Metagenome	189	Y
F032883	Metagenome	178	Y
F033266	Metagenome	177	Y
F036994	Metagenome	168	Y
F038009	Metagenome	166	Y
F055318	Metagenome	138	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F074202	Metagenome	119	Y
F074203	Metagenome	119	Y
F086375	Metagenome	110	Y
F089602	Metagenome	108	Y
F096307	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000128120	F074202	N/A	MCVYEXSLFTCXKEIYMYVEKCLRLFYHXLRSQSLFLTKLLEKCVSNFMKTVDCKINCKMNCKTIYVNFLLMSSCLLCSNNAFNLALLLNDDFFLKLVISKLRLRVETELDFKEEVILRCSFFTAKDDDLDFSFNLETATNFIKFLXFTIFHNDXSSFFNLFLSVKYDVTRSKXADAENRAFESEVVVDLAVLNNVNNVSSSKFENLDCEDVMKRLILIESSFFSSDTVN
Ga0272425_1000128126	F038009	N/A	MIKALNFQLNYVKLYKRSIELICLKNNKSSKEKRISTLDFXXVFFLNDLKNTIKSFLFQMRDKIERSLFLVNELSISXLLMSERRIILLFVSKXETELLFASELRTELLLVSELKTELLLSSEXKIKLLLASKLNAELLLVSNL
Ga0272425_1000128130	F001951	N/A	MMKLKFIDSSRNKRERDEDTVKTTVTKVMIFELKELLVNAETFLTLMNKTMMKTK
Ga0272425_1000128131	F089602	N/A	MKDEXSSFIEILSEENDNLSEIIDIVLQIVNQXKIFHQRMFFLLIEEIVVVNKAIHALLQSFTKI
Ga0272425_1000128132	F008735	N/A	MREITIIIHVHALYQTLLSCIQLIFVSFIFRYVKKLLEFKSDENSDRVCKEMNNERRLIIQDLCNNLSYYYKKLRIQLYINXRTENDEXEQSDNIMLSNLILKLLHYMKDLNXIFNHTLSELFDSTLIIDQEIVKXLHLNERIIKRDFNVXKCCRKCRSFVMSKTELNYKYY
Ga0272425_1000128140	F074203	N/A	MSSHSSTEERSEEFRNRFFQISDADSLKSRTKSSSAASFIHEDDESFAETIILFVFYEIXKTRSLVLDEETNQLYKLNKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDTAEITQARCEHDYVNLYRIVDDLLKELAQLFDDSNKKVNFHKEYYNLIQEFKKFSEFYTQFQRLSFYLDYHKK
Ga0272425_1000128141	F061401	N/A	LNNDQQVIQEIKNKIKRVNDLSKTIFHKATIVTQSVNHLKSDQLKSRDAILTNVKEADILVESCFIYHKSGHSSKECLDQSTRINAVNNEYDCFDFDLNFDSKN
Ga0272425_1000128147	F002432	N/A	MKFSNNSNIFLITSMIFFYFNKEFHSXMSFDSNMMNYETTHERLEARKADDIVIXMKELLNFNRQQLKKTKLIIEVQINKHKRNVTYEVDDXVXLSFRNVKTMRLCKDLKDKQLNLYQITVKVSVFYHLCLSVSMKHLHSMFSSKLLQLYSEDFLSEQHSELLKLITIKDDEH
Ga0272425_1000128155	F028978	N/A	MKIADLEEKKNDESIYQLILEANRINKNCILLHEVVLKDEAQYEDTKLRDCRVQNKILYRDDLL
Ga0272425_1000128160	F033266	N/A	MLSRSLTEERFEEFRNRFSQTSDADSLKPRTKSSSAASFIHEDDESFAETVIPLVFYEIXKTRSLVFDEETDQLYKLDKQQEDEIKELKTRL
Ga0272425_1000128161	F004755	GAG	LSYIHSRLFNDAAEITQARRERDCVNLYKIIDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSKFYTQFQHLSFYLDYYKKQLIADLKDKIHLHLRFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRINDLSKTIFHRATVVTQSVDHLKSDQLKSRSAILTNIKEADILVESCFICHKSDHSFKECFDQPTRINAVNNEYDRFDFNLNFDSKN
Ga0272425_100012837	F096307	N/A	MLYIVVTQVNASLKEDVLKHKKDVDLKDVCNTKKCVCHKNLLITRNTKKCVCLKDNRSXLENAKEEKRCXVIFESNLSQI
Ga0272425_100012838	F032883	N/A	MQNDXVKXLFMMKFSENFNIFSIISMTSFYFNKNFHLRMSFNSDTTDYKTIRERLEAEKANDIII
Ga0272425_100012852	F059497	GAG	MFIEDIDRKIVYNTQCKLEIINIFSVNEMTQNLEDIKVKLSLKHQNFLDVFDXVQADRLLFHHSYDHKIELTSDVTSSHCQAY
Ga0272425_100012859	F086375	N/A	MFILFVYSKFIASXNCDKNXFDEIKKHYKRQNNDHVIIFKXLHKLRQFNVXQEVNEINKAVMKDNVKDEIEQKXKNKDIHDNTSQ
Ga0272425_100012865	F010214	N/A	MXCLSKLLMKVFMLFDYDTSSLLCFSLMIFYTMMSRFDSXFKDERRFLCTHDAHDCNVRKAVFFYSMIVIHXAEKYVMKERCTXXENKVXLYXVILFFSXFDLCHVDVEXIVSINVQSQSFNVXLXSMKENVFXLFSXALNFPRE
Ga0272425_100012871	F036994	N/A	MKSVIEADSLVDLLIEEIDYRLVIEADSLVACEREVDQFTDR
Ga0272425_100012876	F055318	GAG	LNDIETLRDDEALCVDRVQSFRDRADFDNLNVHATSNLHADEKVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000128

Overview

Ecosystem & Geography

Associated Families

Sequences