Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000143 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000143 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	142365
Total Scaffold Genes	152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (22.37%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

142365

Total Scaffold Genes

152 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (22.37%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F013598	Metagenome	269	Y
F019584	Metagenome	228	Y
F021452	Metagenome	218	Y
F037509	Metagenome	167	Y
F065268	Metagenome	127	Y
F076668	Metagenome	117	Y
F078020	Metagenome	116	Y
F086375	Metagenome	110	Y
F098340	Metagenome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000143107	F005901	N/A	MNDKLHANVDHFDNENICITYVISRLEDDAAEHIFAXRRHDASHSYISIYELFEHLKEIYDDQNKNRKCRRKYNALRQAEKSFNVFYFDFMKLFSYLEYDDCTLMNNLQNKINNRLQNALSICSKDFTTLHRLKSFLQSVNNKQRVNYQLRSERCMIIVKVIIASEKRVTLLSAVMTSIIKYVKSTIFSTSESVRSSIVCYICKILNHLSKNCSQNKINTSASQAFIFRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272425_1000143110	F003820	N/A	MTRSRSISNSLDYDDCILMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQNVNNKQXVNYQLCSKRCTVIVKVTVVSDKCAATSLSVTTLIINYIKFIIFFTSESARSSIIYYTCKISSHLSKNCSQNKINTFASYAFTFHLHEIIISKNKKNEKMSSFKNSKTKN
Ga0272425_1000143114	F013598	N/A	MNFIINLSDSSKYNAILTIICRLLKERHYISCIIDDEDITVEKTAEMLTQ
Ga0272425_1000143118	F076668	N/A	MLKSLMHLTDHYVIKETSVFKSITTTKKIMHMNNALSTDILMLCNRKDATNQTLLRCAKFKNIRRLQKISFSKXFSKDXLKRLCMIMLKQTCYNIIFAFSALSXVLFKKSLKTLRFSLXKVSALLFCIITFVVEFSLTFCSMQTSTXXQFMSNASSFKIEIXDLXRILXXILMSCFSRQTRKCLSSSVR
Ga0272425_100014313	F021452	N/A	MSDDSFDFKSFTVDIILSSLEKIFRSLALINTEVTDMTFINESLMSKLCEHFDIQLISLXKSKSIXSYDEIFDQKSITYTLYTSIMIQEHKNEMMSLLITVTSVSRLNRASQCL
Ga0272425_1000143131	F078020	N/A	MRFFFDHLINAXKDAALTLNIEKFFFEAVEADRXSTLRAELIEEFDDHDYFECEALTDIEKTEMRASNXFEKTMTSFRIFSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLGRILXVMIFLVSFSSYSLINFSLASRMSXISSFXHIXSTSFVXIKM
Ga0272425_1000143132	F019584	N/A	MIKAQTTKQIIYAEKSVKATRRIIEMKITDQSKPRDTVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN
Ga0272425_1000143134	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKESSLIARESNRSRESTNSQTKQQKRLHLLLSSIALRSISFF
Ga0272425_1000143144	F086375	N/A	MFILFVNSKSITSXNRGENXFNEIKKHYKXQNNDHVIIFKQLHKLKQFNIXQEVNEINKAVMKDNVRDEIKQEQKNKDIHDNASQ
Ga0272425_100014316	F065268	N/A	MIKSTELESESMSIAHYELQNVERKSLLSQNQTASEEEDMNASLNTEEENMNMLFFNHEMIKISISIELNAXISAYEADDLIVFIKYICQQHDIEIKIHNDMI
Ga0272425_10001437	F098340	N/A	MIEVAAYQTLVKNKKIKIFFLIISEINKALSSVEDFAKLNEMISVMSLDELKKKLSLVYHDFLNVFDREKTTQLLLH
Ga0272425_10001438	F008115	N/A	MNFITELSLSEDYNVICIIICCLIKEHHYVFCHXKDDDISVEETVXIMLXNVYXLHDILSSIVSNKDFQFILTMXKSLCKRLRITASLFTVYHSKIDDQTKRVNQDVERELRIYCNYMQNDXVKXIFMMKFSDNFNIFLIISMISFYFNKEFHFRMSFDSDTTDYETTHERLEARKADDIVIXMKELLSFDHQQLKKMKLIIKVQINKHRXNVIYKVNDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKARVFYHLHLSVSMKHLHSMFSSKLLXLYLENLLSKQHAKLLRLIIIDDDDDEHXKIDDILNFRCYXGXI
Ga0272425_100014394	F003820	N/A	MKLFSYLDYDDCTLMNNFQNKINNRLQNALSICFKDFTSLHCLKIFLQDVNNKQRVNYQLHSQLCTVTVKVTVVPDKCIATSLSMTTSIINYIKSTLSSIFESARSFIICYTCKISSHLFKNCSQNKINTSASYAFTSHLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272425_100014397	F037509	N/A	MILISLFIQIHLIDNEMSIKKFVYLMINDIKRQNNIKKSIKSTKTYDHVIARESIAQSVASVQID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000143

Overview

Ecosystem & Geography

Associated Families

Sequences