Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000206 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000206 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	123085
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (32.20%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

123085

Total Scaffold Genes

118 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (32.20%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008169	Metagenome	337	Y
F035571	Metagenome	171	Y
F036504	Metagenome	169	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F074204	Metagenome	119	Y
F086376	Metagenome	110	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100020646	F048018	GAG	MIRRRSLSELSTYFLSXKYRXFSYSLHSTREILLXCRASLQSASIIXAANLSLISTYSHNVXVRMSAESSLRFRVSXFSXDLMFSTLNSLISRFIRTRICKDVEIIENRCNXTESKAMICDXSFMTLMLKMLKMRFLTILRSKT
Ga0272425_100020655	F035571	N/A	MYVSVSKVSMFTLLNVFATXHRVXFXSVFSLHSLLNSSFFLSRXCQTDTLNAISDLTIAEYTCLAFVKIALHVKTSRXLSVSILVTXFIFICQRCTLHCSFMFSCISRIRTSDFNLITELSIYMLVIMLNLFDFLVKCVSSYFSDVNVASXMQAHFAQTSCALLNVLQISSMNLS
Ga0272425_100020658	F038009	N/A	MSSMIKALSFQLDYVKLYKRLIELICLKNNRSFKERRILTLDFXXVFFLNDLKNTTRSFLFQMKNKIEQDLFLVNKLSISXLFMSEREVILLLVSRXETKLLFASELKTELLLVSELKTELLFSSEXETRLLLVSELKTELLLLSEXKTRLLFASKLSVELLLVSNL
Ga0272425_100020660	F074204	N/A	MIVFCILHQAQSRVLALTLIDSEVSTYVFINKFFAQQHHLLLHQLTHSCRLQEFDDQVTLIDDITHVIEITMILNEHIERLFFYVIELSQYLIIMSLS
Ga0272425_100020662	F001951	GAG	MMTMMKFRFIDSLRNERERDEDIVKTTVTKMMILEFKELLINAKMFLTLMNEMMTEMK
Ga0272425_100020664	F094625	N/A	MKSSHNLLINDEHAVKQFTQSVIENSVEIFRAMQELQNQVQQHDIIISSLFIIFSSSIYIKLNSQFLATIVQIVAQILNNQFLFIIHLFANSVTVIITFKFKKLLDIFKYEKNKDXLNAXEQSLIQRMNVNDNHYFSHRVKIVYVES
Ga0272425_100020672	F036504	N/A	VNHYFTEKICIVYVIFRLEDDADQQIYAKHRVDAFSFYQSLSKLLKHLKEIYKDQNLIXKCRREYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQXTVKSIAASKKRFVSSLTSASVLTTSYVQLATFSTFESEXSRMSIICFNCKVLSHLSKNCSQLKTSTSASRAFIPRLNEIIMSKKEKKLFTEKSKNETKN
Ga0272425_100020678	F008169	N/A	MFSRSSTEEHFEEFRNRFSQIFDADSSKSRTKSSSAASFIHEDDESFTETIILFVFYEIXKAXSLVLDEETDXLYELDKQQEDEIKELKTRLQAKENTSSDFTYFERSRSQKIPDSSLFTDEKNSTXKNXYEKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAKIIQTRRERDYVNLYRIVEDLLKELAQLFNDLNKEVNFRRKYYNLVQEFKKFSKFYTQFQRLSFYLDYHKKQLIADLKDKIHSRLXFVXVDQLVQPDFLKEIRFYLIHLNNDQRVIQEIKNKIKRVDDLSKTIFHKVTVVTQSVDHLKSDQLKSRDAILTSVKEADMLVESCFICHKSGHSSKECLDXFTRINAVNKKYDRFDFDSNFDSKN
Ga0272425_100020682	F086376	N/A	MTRSTESESVSIAHYDFXNVRRESLLSQNXTASEEEDTNVLSDIKEKNMNMLLFDHEMIKISISTELNAXISTHEADDIIVFIKYICQQHNIEIKIHNDMIQMLENVNEINITLKATQTRLQKKNRNKNVIIDHLKVALSQQSTLISEDXFSKSIKLLNSSLFEDSSQNVDNXLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000206

Overview

Ecosystem & Geography

Associated Families

Sequences