Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000232 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	117445
Total Scaffold Genes	137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (21.90%)
Novel Protein Genes	22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (18.18%)
Associated Families	19

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F004755	Metagenome	424	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F010214	Metagenome	306	Y
F017941	Metagenome	237	Y
F026450	Metagenome	197	Y
F028667	Metagenome	190	Y
F036994	Metagenome	168	Y
F037509	Metagenome	167	Y
F038008	Metagenome	166	Y
F046102	Metagenome	151	Y
F055317	Metagenome	138	Y
F055318	Metagenome	138	Y
F071806	Metagenome	121	Y
F087979	Metagenome	109	Y
F087980	Metagenome	109	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000232107	F038008	N/A	MSINQHHLDTFALKQRVYLNDNDSKEDVTTTAMRINXELNKRLRKLTLIITHHEELKELIVRMKRLADVVTENQECHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQQVQITHENIQS
Ga0272425_1000232110	F010214	GAG	VLFIYDASSLLCSSLTVFYTTMSRFDLRFKDERCFLCIRDARDCNVRRAAFSCSMIVIHCAEKYVMKERRTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALNFPRRQIYDLTSSKEDELKLFQYISVINESLLLRAL
Ga0272425_1000232111	F046102	GAG	VTFIKDAMKNVLISSTMSSSDDFFASKSLTIECVLFRNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIREFNDYYVKKLITHAIYLNLTVQDYMKRFVFMLITRLDQHQMILEKTXMNKIKMIIDMKDNRLQFSSFEAHIKASIKAHSTVLSSKKIVIE
Ga0272425_100023212	F055317	N/A	MFTDEKNSTXKNXSLDIREKLAMNVDIFSNELYKLSYINFQLADDVVEVTQVRRDFNCDNFYLTVNELLKKLAQSFHDSNKKDNYCKEYINLIQESKKFSDFFNQFQXLYIYLKYQKNVLVIDLKNKINSRLXIFXTAQMKLLIKLLNIRNYLIRLNNEHKAVREIKNKLLKRDDSKIIISRATIAVQSSASKSDXSKLRSAVLTSVKNADVLVKTCFVCHKSGHSFKECLNQSIKVNAVDENYNHFKFNTESEFESKN
Ga0272425_1000232125	F000597	N/A	MKDVLISSMTSMLNDSFASESLITECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKRLITHVIYSNLTVQDHTIDTASILIIQLDQH
Ga0272425_1000232132	F055318	N/A	MLRDDEALCIDCMQSFRDRADFDNLNAHVTSNLHADEKV
Ga0272425_1000232136	F008169	N/A	MSSRSLTEERFEEFRNRFSQTSDVDSSKSRTKSSSAASFIHEDDESFAETIILFVFYEIXKARSLVLDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQDKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARREHDCVNLYKIVDDLLKELAQLFDDSNKKVNFCRKYYNLVQEFKKFSEFYTQFQHLSFYLDYHEKQLIADLKDKIHFRLRFVXVDQLVQPDFLKEIRFYLIRLNNDQRVIREIKNKIKRVDDLSKTIFHRATVVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSGHSSKECLDRPTRINAVNNEYDRFDFDSNFDSKN
Ga0272425_100023214	F008169	N/A	MSSHSLTEERFEEFXNRFSQTSDADSSKPRTESSSAASFIHEDDESFAETVILFVFYETXKARSLALDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNWYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERGCVNLYKIVDDLLKELAQLFDDSNKKANFRREYYNLIQEFKKFSEFYTQFQRLSFYLDYHKKQLIADLKDKIHSRLRFVXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVDDLSKTIFHRVTVVTQSVDHSKSDQLKSRDAVLTSVKEADILVESCFICHKSGHSFKECLDRPTRINAVNNEYDRFNFDSNFDSKN
Ga0272425_100023218	F071806	N/A	MKLQSQIMILNSVQLHLFSVISTLLQILTFMNLEIEEFNVENIKFQLNQDILNLDEDFADILTQTLXK
Ga0272425_10002322	F026450	N/A	MSRFFKERFEALFFIVEDNDSFAEIITSSMTMKALKKRCKELKARLQARKIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFLSERVKLSYVHFRLFDDAAEITQSRRERDCFNSHKIVNELLKELSQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSXLRFA
Ga0272425_100023227	F036994	N/A	MKSVIEADSLVNLLIKEIDYQLVIEADSLVACEREVDRFTDR
Ga0272425_100023228	F036994	AGCAG	MXDRMIIEADSLVDLLIEEIDYRLVIEADSLVAREREIDQFTDR
Ga0272425_10002323	F007840	N/A	MIDAIKRQNNTREFIESIARLVELLDDLQLIKYTSFISINRISDKESSLIARESNRSRESINSQIKQQKXLYLLLSSIALRSISFF
Ga0272425_100023235	F004755	N/A	LKELAQLFDDSNKKVNFRRKYYNLIQESKKFNEFYTQFQQLYFYLNYHEKQLIVDLKDKIHSRLRFIXINQLVQSDSLKEIRFYLIHLNNDQQVIREIKNKIKRVNNVSKIIFHRATVVTQQSFNHLKSDHLKSRDAILTSVKEADILVKSCFICHKSDHSFRECLNRSTRINAVNKEYDCFDFNFNLNFDSKN
Ga0272425_100023244	F096307	AGG	MLYIVVTQIDVSLKEDMLKHKKNVDSKDVCDTKKCVCHRNLLTTHNTKKCVCLKDNRSXLEDAKEKKRCXVISESNLSQI
Ga0272425_100023245	F037509	N/A	MILISILIQIHSTDNKMSIKKFVYLMINDIERQNNIKKLIESTRTYDHVIARKSIAQSVASVQID
Ga0272425_100023262	F087980	N/A	MIENSVEIFRAMQELQNQVQQHDVIISFSFIIFSSSIYIKLNSQSLATITQIIAQILNNQSFLVIHSSANSIAIFIAFKFKKLLNIFKYEKNKDQLNA
Ga0272425_100023263	F087979	N/A	MKEKNENSTFIYMNRAESRLNNSFIDLRLQKFMHMTEIIKTELLRLN
Ga0272425_100023285	F017941	N/A	MKIADLKKNVSESIYKQVLDVNEIDENCTLLREAKIKDEAQCKDIKLKNCRV
Ga0272425_100023287	F000597	N/A	MMSMSDDSFTSESLTTECVLSNNEISYSLKSLIDIKAADYSFIDEVIVQIVYDQLQIESLTLIKAKSIQEFNDYYAKKLITHVIYLNLTVQDHTIDTASMLIT
Ga0272425_100023288	F003820	N/A	MKLFSYLDYDDHILMNDLQNKINNRLQNALSVCFEDFTSLYCLKIFLQDVNNKQQVNYQLHSQLCTVTVKVTVVSDKCTATSLSVTTLIIDYVKSIFSSISESARSSIICYTCKTSSHLFKNCFQNKIDTSASHAFTSRLHEIVISKNKKNEKMSSFKDSEAKN
Ga0272425_100023291	F028667	N/A	MCDFESVESXTAHLLKSIASRRVFLISFNASVDVKNADISXNIKTEEQLRQXVHDQSNEIIKMLNEFKSSXDMTLKLNEQXIVVQVEHDKRLNQLKVKQMIIDTLEETNKRYQEKMLNLKNKLKEVLHSADQSRSRQSTESQVSTKSLSRQSIKNHTQRKLFTLFNNDHHKSFKFLNSSVFIDEDESTXDSXRIKINDKLQTNVDHFVNETICIVYVISRLEGDAAEHIFAXCHHDALHSYISIYKLLKHLEEIYEDQNKNXKCHHEYNALRQADKFFNVFYFNFMKLFSYLEYNDRTLMNNLQNKINNCLQNALSICLKDFIILHCLKSFLQSMNNRQXVNYQLRSERCTIIIKVIITSEKRVTSLSAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCFQNKINTSAFHVFISCLHEIIISKNKENEKMTFFFKNNEAKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000232

Overview

Ecosystem & Geography

Associated Families

Sequences