NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000238

Scaffold Ga0272425_1000238


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000238 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116326
Total Scaffold Genes136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (16.18%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Associated Families20

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F007840Metagenome343Y
F008169Metagenome337Y
F009377Metagenome318Y
F017941Metagenome237Y
F018839Metagenome232Y
F025887Metagenome199Y
F033265Metagenome177Y
F037509Metagenome167Y
F044227Metagenome154Y
F057012Metagenome136Y
F058565Metagenome134Y
F061402Metagenome131Y
F070712Metagenome122Y
F074202Metagenome119Y
F081945Metagenome113Y
F083460Metagenome112Y
F086376Metagenome110Y
F091080Metagenome107Y
F096305Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10002381F096305N/AMSRLFKERFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAKEVISSSSIYSERSRSQKILDSSLFTDEKNSTXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIIDELLKELAQLFNDSDKEVNF
Ga0272425_100023811F044227N/AMXLQIKSSDDEACTHALLKLIASAIKNATRCXLLKLLNNHHHHEKSQSSSEDDDENEALEAI
Ga0272425_100023818F025887N/AMFNDSFDFKSFTVDIILNSLEKIFRFLILINTEVTEMTFIDESLMSELCEHFDIQSISLSKSKLI
Ga0272425_10002382F007840N/AMIDAIERQNNTRESIESTARLVELLDDLQLIKYASFTSINRISDKEPSLIARESNRSRESINSQIKQQKQLHLLLSSIALRSIPFF
Ga0272425_100023820F009377AGAAGMNVSLNIEEKNMNALLFDHEIIKISISIELNAXINAHEANDLVAFIKYIXQQHDIEIEIHNDMIQMLNDVNKINIKLKVINIKLKVTQTTVNAVQTRLQKEMKKKNVIIHHLEATSSQLSTLISKDQFLKSIKLSDSSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEMKIAYVKSRVSETMIKHIALRMRNMITNSFLEAEEILSIINKMYDDLNQHHTIQQQFLKLY
Ga0272425_100023822F037509N/AMILISLLIQIHLTDNEMSIKKFVYLMIDNIEKQNNIKKSIESTKTYDCMIARESIAQSVASVQID
Ga0272425_100023823F070712GAGMSDIKKKKFLNKIQKQVIFAEKXDSLNFYKKIKVTTLVDHSKSRDAILTNVKDINLQAEICFICHKSDHTFKECSDXTLRINVLEDDKFDXFTLNSEFDSDSKN
Ga0272425_100023828F002432N/AMXQSLCKXLKITINLLTVYHSEINNQSEXVNQDVECKLRIYCNYMQNDXAKXLLMMKFSENFNIFLIISMTSFYFNENFHSRMSFNSDTTDYETTHERLKARKADDIIIQMKKLLIFNLQQLKKTKQIIKAKINKHRXDVIYEVNDXVXLFSRNIKTTKSCKNLKDKQLELYQITVKVEIFYHFRLLISMKQLHSMFSSKLLCSYFNDLLSEQHSESFKFLTIKDDEHXKINDILNFRHYXDXIQYKIKXTKLDXDDKXYYVDKEEFKNLKEVLVEFHKLYSDKSH
Ga0272425_100023829F017941N/AMKIADLKKNISESIYKQILEINEINENCMLLCEAIAKDETQYEDIKLKNCXTQNDVEIMSRN
Ga0272425_100023836F009377N/AMTRSTESESVSIAHYDFQNVRRESLLSQNQTASEEEDTNVSSDTEEKNMNMLLFDHEMIKISISTELNAXISAHEADNIIVFIKYICQQHDIKIKTHNDMIQMLKDVNEINIMLKAAQTRLQKEMRNKNVIIHHLKTASSQQSTSISEDCFLKSIKLSNSLLFEDSLQNVNNXLSQMQNKLKINKNHFSIKELKIIYIESXVSEAAIKHIASCMQNIFLNSFLEVEEVLLIINKMYDNLNHHYMT
Ga0272425_100023837F091080N/AMIILCXFRQVINRNIISFLCSCIMINVYKVCVIDFXSKISSYDQIDFDFNNDIDXISKHSHSSDIKDSSMKVMSVTSVFIKAKDLNIFSKLLKMTLTVNDLKSNESSNMLMKQNMSISFSITTLMKADHFSNSQRFCALESSXNSHTLYILTFYIXSKVFS
Ga0272425_100023853F061402N/AMIEFVNNNAISLSIEQLTFFLNKNFHSHMSFDSNSIEYEITQAKIKADKAKNIFKYMK
Ga0272425_100023857F057012N/AMSDDSFDFKLFIVDIILSSLEKIFRFLALINIEVIDMTFIDESLMSELCECFNIQLISLLKSKLIQSYDEISDQKSITHALYTLIMIQEHKNEMMSLLITCLNQHKIIIENFXLKRNQILINSANDXLISSLKIXTLKSVVSKASNQSAFYRSESSEICKMK
Ga0272425_100023859F086376N/AMTRSSESTSIACYDLRNARRESLLSQNQTASEEEDTNASSDTEEENTNVLLFDHEMIKISISTELNAXINIYKADDIIVFIKYIYQQHNIEIEIHNDMIQMLENVNEINITLKITQTRLQKENRNKNMIIYHLEAASSXQSTLISED
Ga0272425_100023863F081945N/AMFSHSFIEERSEEFRNRFSQISDADSLKSQTKSLSAASFIHEDDEFFAETIISFVFYEI
Ga0272425_100023864F008169AGAAGLKTRLQAKENTSSDFIYFEHSRSQKISDSSLFTDEKNSIXKNXYEKIQNKLEINVNLFSNERVKLSYVHSRLFNDAAEITQAKRERDYVNLYKIVEDLLKELAQLFNDSNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSHLXFIXIDQLVQSDSLKEIRFYLIHLNNDQXIIXKIKNKIKHVNDLSKTIFHKVTVITQSVDHLKSDQLKSRDAILTSVKEADILFKSCFICHKSDYSFKECFNXSTRINAVNNEYDCFDFNSNFDSKN
Ga0272425_100023869F033265N/AMFFVIEKTMTSQSKKQFKSCYETFIDCMIYLVLLFQTETFNLYQLCEKVFASDXESQLVYSQFIILRSTINQNKSIKTLNANLESTAITCRTTESNKYLXXNSATISIFSQSLQXFSFTSIKNFTLEXVLIQIQLTTKQLVNNLKLKKQMILSFKXNSYXASIINNXKRRSXSSKFKLINIDETSSMK
Ga0272425_100023872F058565N/AMIASDVDSLQENRDSKSKCSRNNEKNIANIIDLLIKISTLEKEKSKDHSXKEIALKLI
Ga0272425_100023879F018839N/AMIAKVVTFNRLINDLYAAVFIIAMFIESKDEDLTELNDFTILLNEDDFSLSRVTTEEINLFSI
Ga0272425_100023882F074202N/AMCVYEXSLFTCXKEIYMYIKKCLRLFYCXLKSQSLFLTKLLEKCVSNFMKTVDCKMNCKTIYISFLLMSSCLLCSDNAFNLALFLNDDFFLKLVISKLRLHVETELDFKEEVILRCSFFTAKDDNLDSSFNLETATNFIKFLXFIILHNDXSFFFNLFLSVKCDVTXSKXADAENXAFKSEVVVNLAVVDLAVLNNVDNKNSSKFENLDCEDDMKRLTLSVSSFFNSDIVN
Ga0272425_10002389F083460N/AMXLQMKLSDSQAYSDALLELNASLIKYATRHXLHELLSHHLNHEESQSNNENDDENEAAEAV
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