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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000282 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109817 |
| Total Scaffold Genes | 147 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (28.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F005901 | Metagenome | 386 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F098339 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_1000282126 | F000597 | N/A | MKDVLISSMMSMLNDSFASESLTTEYVLSNNEISYSLKSLIDTEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKSIREFDNHYAKKLITHVIYLNLTV |
| Ga0272425_1000282133 | F005901 | N/A | LIYELFEHLKEIYDDQNKNQKCRCKYNALRQAEKSFNVFYFNFMKLFSYLEYDDHTLMNNLQNKINNRLQNALLICLKDFTTLHHLKSFLQSMNNRQRVNYQLRSERCMIIIKVIITSEKRVTSLSAVMILIIKYVKLTIFSTSESVRLSIVCYICKILNHLSKNCFQNKIDTSASQAFTSHLHEIIILKNKENEKMSSFEDNEAKN |
| Ga0272425_1000282134 | F000597 | N/A | MSDDSFASESLIIECVLSSNEISYSLKSLIDIEAADYSFINEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHMIDTASILIT |
| Ga0272425_1000282139 | F017941 | N/A | MKIIDLKKNNDQSIYKQILEANEIDENCTLLREAIARNKA |
| Ga0272425_1000282140 | F013598 | N/A | MNFIINLFDLYDYNVILTVICRLLKERHYISCIIDDEDITVEKTAEMLLQ |
| Ga0272425_1000282142 | F098339 | N/A | MIEFVNNNVLSSVIFLIFFFMNKSFHSHMSFDSDIIEYESTRERLQIDQVKNISEQMNKTLIFAREALIKTRKQMVNQANKHRKKINYKIKSKMFMNIQEMIDEFHTRYSRKAH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |