NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000340

Scaffold Ga0272425_1000340


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000340 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99832
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (18.00%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F002432Metagenome559Y
F003820Metagenome466Y
F005901Metagenome386Y
F008735Metagenome328Y
F010214Metagenome306Y
F038009Metagenome166Y
F057010Metagenome136N
F074203Metagenome119Y
F075494Metagenome118Y
F089602Metagenome108Y
F091080Metagenome107Y
F094622Metagenome105Y
F100079Metagenome102Y
F104135Metagenome100Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100034016F038009GAGMIKALNSQLNYVKLYKRLIELICLKNNRSSRKKRISTLNFXXVFLLNDLKNMTKNFLFQMRDKIKQDLFLVNELNISLLLISERKIILLLVSRXKTELLFVSELRTELLLASELSAELLLMSKXETELLLASELRTELLFASKLSAELLLVSNL
Ga0272425_100034018F089602N/AMKDERLNFIEILSEENDNLSEIIDIALQTVNQQEIFHQKIFFLLIKEIVVVDKAIYVLLQNFAKI
Ga0272425_100034019F008735N/AMKEVMIIIHVHALYQTLLSCIQLIFVSLILKYVKKLLKFRSNKNSNKVHKEINDEERLIVQDLCDDLSYHHKRLRIQFYINXRIKNDEXKXSDNIMLSNLILKLLHCVKDFNXIFNHTLSELFNSMLIVDQEIMKXFHLSKRITRXDFNVXKRCRKCRTFIMSETELN
Ga0272425_100034020F010214GAGVSVLFIYDASSLLCSSLMIFYTMMSXFDFXFKDERCFFCIRDAHDCNIRKAAFSCSMIIIHCTEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSINMQLQSFDVXLXSMKENVFXLFFXALNFLRRQIYDLTSSKEDEFKLSQYISVINESLLLQAL
Ga0272425_100034029F094622N/AMFASKQRVYSNDSDSKDDVTVIVMRINXELNKRLRRLTLVITHHDKLKKLVARTKHLANVMIVNQECHEKIYKVYSDNQTSLKTVKAMISTKDQTCLQXVQIMHESIXS
Ga0272425_100034044F091080N/ALFAEFINIXFFFNQKFLMIILCXSKXVINRNIISFLCSCIMINVYRACVIDFRSEILSYNQINFDFNSNIDXISKRSHSFDIKDSSMKVMSMTSVSIRVKDLNIFSRLFKMTSTMNDLKSNELSGMLMKQNMSISFSVTTLMKTDRFSNLLQFHASELI
Ga0272425_100034045F104136N/AMIFSIRLTQIFSKSXSTNELXIXTNSLISACKLMFDXRNXMLDQLSRHQQLKSLALLLASXRRSLLQSQLQSLHERNSEYXTLILLERSCLKKNSTSNARSQNIKHVTVLNQLRCMKLQQIRKTICLHQSSDXEXYTHILLHQHAX
Ga0272425_100034048F100079N/AMFRHRHFICEQYADEKTLLKEEKHKRINKEXSNYAVXLKV
Ga0272425_100034049F010214N/AVFVLFIYDASSLLCSSLMIFYTTMSRFDSXFKDKRCFLCIHDAHDCNIRRAAFSCLMIVIHCAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSINVQLQSFNVXLXSMKENTFXSFSXALDFSCRQIYDLTSSKKDEFKLSQYISVINESLLLRTL
Ga0272425_100034052F074203N/AMLSHSFTEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIIPLVFYEIXKARSLALDEETDRLYELGKQQEDEIKELKIRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYGKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEIIQARRERDYVNLYKIVDDLLKELTQLFNDLNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHEK
Ga0272425_100034056F003820N/AMKLFSYLDYNDCTLMNNLQNKINNRLQNALSVCLEDFASLHCFKIFLQDVNNKQRVNYQLRSQLCTVTVKVTVVPDKCAATSLSVMTLIINYVKSTLSFIFESARSSIICYTCKTSSHLFKNYSQNKINTSASCAFTLRLHEIVISKNKKNEKMSSFEDSKAKN
Ga0272425_100034057F000597N/AMKEMLISSTMSMLNDSFASESLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHMIDTTFNDSQKNLNEQNQSSN
Ga0272425_100034067F075494N/AMLLNEIYCTXVINEVEKMSVHNVSENTSMYSAMHVRSMLLRIMTLAVQKTHLDEVHFLRSRISRSEFENLRRYNDEMLIHKDCNVAEKQLNFVAETVDCKQLISRAIVRVLTIHEMTYNFSSKFIVELIKILQQEDEFAVRLKADETTSI
Ga0272425_100034069F104135N/AMFAVYLSILKHQLSLYSDEHKXAHLFIKLRSELHVIITNVQSIFITXDALINLVARLKINLQKKRILSLKQSQDKDLHDXDKINKKIHLKRKKSHXSTKFNSSSKTSLHTSSHYSKNLFNITCYICNQKNHYFIDCKDEKIKNRSKESDLNXVFIDSMLHMSHLKISKKDKLLMNASNHRGKNKKFSS
Ga0272425_100034074F005901N/ALNSFTLNYELFDHLKEIYDELNKNXKSXREYNALRQADKSFNVFYFNFMKLFNYLNYDDCTLMNNLQNKINNRLQNALSICSENFTSLTHLRIFLQDVNNKQRVNYQLRSKRCIIIIKVTVISDKRAVTSLSVTTLIIDYVKFIIFFISESARSFIICYTCKISNHLLKNCSQNKINTFA
Ga0272425_100034075F000597N/AMKDVLISSTISMLNDSFASESLTTEYVLSSNEISYSLKSLIDIEVADYSFIDEVITQIVYNQLQIKSLTLIKVKSIQEFDNHYVKKLIIHVIYLNLTV
Ga0272425_100034081F010214GAGMRVSVLFDYDASSLLCSSLMIFYTTMFRFDLQFKDERRFLCIHDAHDCNIRRAVFSYSMIVIHXAEKYVMKERHTXXENKVXLYXVILFFSXLDLCHVDVEXIVSINVQSQSFDVXLXSMKENVFXSFFXALNFSCE
Ga0272425_100034086F057010N/AMTSSSIVEHRSSLNSFLLKHSFNSTSSFFFIMPHLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSTYSERSRSQKILDSSLFTDEKNSTXENWYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLQFAXVTQLIQLSTLKEIRFYLIQLNNNQRAIQEIKNREAMIKAXTIKQIIYAEESVKATRRIIETKMTDQSKPRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSSNFDSESDSKN
Ga0272425_100034094F002432N/AMQNDXAKXLLMMKFSENFNIFLIISMTSFYFNKSFHLRMSFDSDTIDYETTHERLEARKTDDIAIXMKKLLIFNHQQLKKMKQIIEAQISKHRRDIIYKVDNXVXLFSRNIKTTKSCKDLKDKQLELYQITVKVEIFYHLHLLISMKQLHSMFSSKLLCSYFQDSLSEQHLKSSKSLTIKDDDHXKIDDILNSRRYXDQIQYKIKXTELDXNDEXYYVDKEEFKSSKKVLVEFYNLYSDKSH
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