Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000361 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000361 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	96901
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (19.44%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

96901

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (19.44%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (7.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F009377	Metagenome	318	Y
F013598	Metagenome	269	Y
F021452	Metagenome	218	Y
F023763	Metagenome	208	Y
F028368	Metagenome	191	Y
F042102	Metagenome	158	Y
F048685	Metagenome	147	Y
F065268	Metagenome	127	Y
F087980	Metagenome	109	Y
F089602	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100036110	F021452	N/A	MSDDSFDFKLFTVDVILSNLEKIFRFLALINTEVTDMTFIDESLMSKLCEHFDIQSISLSKSKLIQSYDEISDXKLITYILYTLIMIQEHKNEMMFLLITRLDQHKIIIENL
Ga0272425_1000361104	F089602	N/A	MKNEXSSFIKILSEKNDDLSEIIDIALQTVNQQEIFHQRIFFLLIKKIVIVNKAIHVLLQSFMKM
Ga0272425_1000361105	F087980	N/A	MKQSHRLLIDDERAVEQFAQSVIENSVEIFRVMRELQNQVQQHDVIISFSFIAFSSSVYQESNSQFLAMIAQIIAQILHNQSLLVVQVFANSVAVSTFIKFEKLLNISEYEKNKD
Ga0272425_100036118	F048685	N/A	MKDKELSRHQMRXVQKLADFNFKIMYXSDKQNIKIDALTHQADFMFRDFDDERVHYQXITILTLNXMKIADLKKNVSKSIYKQVLDVNKIDENCTLLHEAKIKDEAQCKNIKLKNCXI
Ga0272425_100036127	F021452	N/A	MFDDSFDFKSFIVDIILSSLEKIFRFLALIDTKVINMTFIDESLMSKLCKRFDIQSISLSKSKLIQSYDEISDRKSITHALYTLIMIQEHKNEMMFLLITCLNQHKIIIENLXLKRN
Ga0272425_100036130	F065268	N/A	MIRSTESESVSIAHYDFQNVRRESLLSQNXTASEEEDTNASSDTEEKNMNALLFNHEIIKISISTELNAXINTHEADDIVVFIKYIC
Ga0272425_100036134	F013598	N/A	MNFIINLSDSYNYNVILTVICKLLKERHYISCIIDDEDITVEKTAEMLLQXVY
Ga0272425_100036139	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFTSINRISDKEPSLIARESNRSRESINSQIKQQKRLHLLLSSIAFRSISFF
Ga0272425_100036168	F009377	N/A	MIRSTESESVSIARYNFQNVRRESLLSQNXTASEEEDTNASSDTEEENMNALLFDHEMIKISISIELNAXINTHEADDIVVFIKYICQQHDIEIKIYNDMIQMLEDVNEINIMLKAAQTRLQKEMRDKNVIIHHLETASSXQSTLIFEDHFLKLIKLLNSSLFEDSSQNVNNXLSXMXNKLKINKNHFSIKELKIVYIESRVSEAAIKHIASRMQNIFLNSFLEVEEVLLIIDKMYDNLNHHHTT
Ga0272425_10003617	F023763	N/A	MSRIECILLFKEIFXATCQSIQLIINLVEMISDVIVESKQKLTSMSLMTTQLLSXHEIFKIFMIHDHLDRVNKVFKLXSSFLESTNNNHKFFIVDLVVTLNRIMLLXKVSNXMKNLILIILRENVFKYIVQSINFYHNLVIXIIVMKNNLESEDFFKNVECNLTFLRSDKEYIFSDEMSERDSYFTIVIDESFIKVREI
Ga0272425_100036187	F001951	N/A	MMIITKFKFIDSSRNKRERDEDTVETTVTEMMIFELKELLVDTKMLLTLMNETMTKMKXDXCYKRIKTE
Ga0272425_10003619	F042102	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNRTASEEEDTNVSSDTEEENMNTLLFDHEMIKISISIELNAXISAYEADDIVVFIKYICQQHDIEIKTHNDMIQMLENVNETNITLKVAQTRLQKEMRNKNVIIHYLKTTLSQQSTLISEDCFLKLIKLSNSSLFENSSQNVDNXLSRMXNKLKANKNHFSIEELKIVYIESQVSEAAIKHIASCMQNIFLNSFLKVEEVLLIIDKMYDDFNHHHTTQQQYSKLYQNKIFFHEFXMKFQRFSAELKYNNKTLLNDLQHKISSNLQQATLNEXITNLNEFVDICMQVDVKLTELNVXSIIKDSAISAAHSVASTSSAXFTSSIFAXKKLRRLNLDSIQKELFKKELCFKCKKSEHKAYDCFKTT
Ga0272425_100036196	F028368	GAG	LCKLNEILSKENYFEKSFLIDTHLIFQNQSFSLRSLINSDSVVYMIIHSNLVDKVCKKLKIQPISLAKEKLIRDYDEKIFKKIITHKILLNLIIKSHKKLTVSMLIADIDHHEVILSKFXMNKNEILLNMQNDVIVFSNQLNTSISIFSIFLNSKHSSXLQSTSSSSITQTKISMMLKRLVQKESFSIXSIDAASFKMLLNRSKKNKIKVFVLFMMNINRKIAYNTQNDLNALNVFSIDETTQNLKDIKAKLSLKYHEFLDVFDXVQLNKLLFHRFYDHKIELINDSTFSCCRVY
Ga0272425_100036197	F008169	N/A	MFSCSLTEERFEEFQNRFSQTFDADSSKSRTKSSSAASFIHEDDESFAEMIILFMFYEIXKAXSLALDEETDXLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSIXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFNDAAEITQAKRERNCVNLYKIVNDLLKELAQLFDDSNKKVNFCRKYYNLIQEFKKFSEFYTQFQHLSFYLDYHEKQLIADLKDKIHSRLRFVXVSQLVQPDSLKEIRFYLIHLNNDQXVIQEIKNKIKCVNDLSKTIFHKATVITQSVNHLKSDQLKSRDAILTSVKEADILVESCFICHKSDHSFKECLNRPTKINAVNNEYDRFDFNSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000361

Overview

Ecosystem & Geography

Associated Families

Sequences