Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000363 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000363 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	96578
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (23.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

96578

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (23.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F008169	Metagenome	337	Y
F021216	Metagenome	219	Y
F038484	Metagenome	165	Y
F070712	Metagenome	122	Y
F087978	Metagenome	109	Y
F094622	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100036312	F094622	N/A	MSIKQHNLDTFALKQRVYLNDNDSRDDVTVIMMRMNXKLNKRLRKLTLVITHHDELKELVAKAKHFTNIVIANQECHEKIYKIYSDNQISLKTVKVMTLTKDQTRLXXV
Ga0272425_100036314	F006206	N/A	LCKLDEILSEENYFEKSFLIDAHLISQNQFFNLCSLIDSDSVAHTLIHTNLVNRVCKKLEIQPISLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADINHHEVILSKL
Ga0272425_100036317	F002432	N/A	MQNDXVKXISMVKFSDNFNIFSITSMIFFYFNKEFHSRMSFNSDMTDYETTHERLEARKADDIVIXMKELLSFDRQQLKKTKLIIKVQINKHRRDVIYKVDDXVXLSFRNVKTTRLCKDLKDKQLSLYQITAKVSIFYHLRLSISMKHLHSMFSSKLLQSYSEDSLSEQHSESLRSITIKNDEHXKIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKSR
Ga0272425_10003632	F008169	N/A	MSSRSLTEEHFEEFRNRFSQTSDADSSKSRTESPSAASFIHEDDESFAETIILFVFYEIXKAXSLVLDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQDKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIVDDLLKELAQLFNDSNKKVNFRRKYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFVXVGQLVQPDFLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRATVITQSVDHSKSDQLKSRGAVLTSVKEADILVESCFICHKSDHSSKECLDRPTRINAVNNEYDRFDFNSNSDSKN
Ga0272425_100036334	F021216	N/A	MKNDAMXREHHELEKAFRNHERSDNDHLNDTLNEHTESISSCDVIKESDERERK
Ga0272425_100036341	F038484	N/A	MCITRMLSAFXRSSRIFIVLLLRCNLCAEIVLMSATRSLYFFHRXFHXSLXYCVIAMLSLVEIIVKKRVCHLHLNCIFASSXMKTFRSTIFLMMSEREMTRLTFVKRARISLHACLISCIXSLTQLCSVILFYNMFRXTCSELMYVSVSKVSMFTLLNASATXCRVXFXSVSSLHSLLNSSSFLSRXCQIDALNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFVSICRRCTSHCSFMFSCTSRTRTSDFDLITELSICMLVVMLNLFDFLVKCISSYFSDANVVSXVRAHFAQTSCALLNVLQISSVNLL
Ga0272425_100036392	F087978	N/A	MFSLKLLRLYSEDSLSEQHAESLRLIIIDDDNNEHXKIDDILNFRRYQGRIQYKIKXKDLDRDNEXYYVDKDEFNDFEKVLNEFHVLYSRKSR
Ga0272425_100036394	F008169	N/A	MQSSLDQENQLILVKQMSENKLFNSIKRIDDKESSXIAXESLKNSQIKNILLINNILFXRLNTXSYVFINTVEHRHSLDFVLSSNFIMSKRSSIKERFKEFRSCFSQISETDSLKLSSAELFINEDDESFTETVILSVSIENXKTQCMTLNRETDXLNELSKQRDDEIKELKTRLQTKEITSSDFIYFKRSRSQKIPDSLXFTNKKNSTXKNXYGKIQNKLEINVNLFSNEXVKLSYVHFRLFDDATDVVQSKRECDCVNLYKIIDNLLKELAELFNDSDKKVNFCREYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLRFVXIDQLVQPDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKRVNNLSKIIFHKVVVTQSVNHSKPDHLKSRDAILTNVKKANVLVEICFICHKSDHSSRECSDXPTRINAVNNEYNRFKFNFDSNFDSKN
Ga0272425_100036397	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKQDLLNLYRKIEVTTLVNHSKSHDVILTSIKDIDLQAEICFICHKSNHTSRECSDXSRVNALENDEFDXFTLNSEFDSDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000363

Overview

Ecosystem & Geography

Associated Families

Sequences