Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000402 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000402 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	92432
Total Scaffold Genes	110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (19.09%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Associated Families	19

Scaffold Components

Scaffold Length (bps)

92432

Total Scaffold Genes

110 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (19.09%)

Novel Protein Genes

20 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F013598	Metagenome	269	Y
F032884	Metagenome	178	Y
F035571	Metagenome	171	Y
F037509	Metagenome	167	Y
F038009	Metagenome	166	Y
F044227	Metagenome	154	Y
F048685	Metagenome	147	Y
F055319	Metagenome	138	Y
F059497	Metagenome	133	Y
F061400	Metagenome	131	Y
F070712	Metagenome	122	Y
F071806	Metagenome	121	Y
F094624	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100040216	F008668	N/A	MISFYFNKEFHFRMSFDSDTTDYKITCKRLEARKVDDIIIXMKELLIFNRQQLKKMKQIIEAQINKHK
Ga0272425_100040225	F059497	N/A	MFIKDIDRKIVYNTQCKLNVINVFSINEMTQNLKDIKVKLSSKYQNFLDIFDRAQADKLSSYHSYDHKIKFTSDVTSSCC
Ga0272425_100040227	F094624	N/A	MSDXDTQFIFNVXKHMCKMLKIDVKLSTTYYSEINDQIKKVNAVIKHYLXVFVNYMQNDXAKXLSEVKFVVNNASSLITLASLFLINLSQNLRLNFKSFKSLLENLMFQAXDKLINVKKFIKKMKKLTEHLHDEMLIAQIIYEFNINLSRRSCFKYFVEDEVXLNACNLSIAHLVIKLNDHNVDLFKIKHVFKNNSLIIELNLSTFMKIHSIFHVILLNHITSDFLLN
Ga0272425_100040230	F071806	N/A	MKLQSQIIALNSVQLHLFSIISASLQILVFMNLKIEKFNVENIKSQLDQDILNLDEDFADILTQTLXK
Ga0272425_100040234	F038009	N/A	MIKASSSQLNYVKLYKRSIKLICLKNNRSSKEKRISTLDFXXVFFLNDLKNTTRNFLFQTRDKTEQDLFLVNELNISXLLMSKRKIILLLVSKRETELLLTSELRTELLLVSELKTELLLSSEXETRLLLASKLNVELLLVNNL
Ga0272425_100040238	F009580	AGTAG	MICIQISERDLTQRLNFSCKQQDFFIYIDDIIVVNIHDIQSEELLIXAFFNDFTQMLQFAIVTQLSLVADFLDFKNNQSLILNDDNNEV
Ga0272425_100040239	F001951	N/A	MKFKFIDSSKDEKEKNKDIVETTVIEMIIFEFKELLVNAKMFLTLINKTMMKMK
Ga0272425_10004024	F002432	N/A	MQNDXMKXLFMMKFSEKFNIFLIISITLFYFNKNFHPRMSFDSNTTDYETIHKHLEVRKANNITIXMKELLIFNHQQLKKMKQIIKAQINKYKXDIIYEVNDXVXLFSRNIKTTKSCKDLKDKQLEFYQITVKVEIFYHLYLLISMKQLHSMFSSKLLCSYSQDLLSEQYSKSSRF
Ga0272425_100040242	F035571	N/A	MSKRERTQLTFVKXACISLHACLISCISLLTXLCSVILFCSMFKXTCSELVYVSVFKVSMFTLLNTSATXHRVXFXSVSSLHSLLNNSFFLSRXCQTDASNAISDLTTAEYTCLAFVKITSHVKTSRQLSVSIFVTXFVFICRRCTSHCSFVFSCIFKTCTSDFDLIIKLFIYMLVIMSNLFDFLVKCVSSYFSDASSFCADIMCFAQCFADFFSESVVD
Ga0272425_100040245	F032884	GAG	MTIRNERVEREECERTKKNESMMTRIEKERLYAQTIDVIDQREDIKQRLXPGYM
Ga0272425_100040254	F001951	N/A	MTKFKFIDSLKNKREKNKDIVKTTVTKMIIFELKELLINAEMFLTLMNKMMTKMKQD
Ga0272425_100040255	F055319	AGTAG	MIEVKVKRLKLVNKMICIQISERDLVQKLNFFHEQQDFFIYIDDIIVIDIHDTQSEKLLIXAFFSDFA
Ga0272425_100040259	F007840	N/A	MIDAIERQNNTREFIESTARLVELLDDLQLIKYASFTSINRISDKEPSLIARESNRSRESINSQIKQQKQLHLLLSSIALRSIPFF
Ga0272425_100040266	F009377	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNXTASEEENTNASSDTEEENTNALLFDHEMIKISISTELNAXINTHEADDIVAFIKYMCQQHDIEIETHNDMIQMLKDVNKINIMLKAAQTRLQKEMRNKNMIIHHLETALSRQSTSISEDHFLKSIKLLNSSLFEDSSQNVDNXLSRMQNKLKTNKNHFSIEELKIVYIESXVSEAAIKHIASRMQNTFLNSFLEVEEVLSIIDKMYDDLNHCHTTQQQYSKLY
Ga0272425_100040268	F044227	N/A	MQLQIKSSDDEACTHALLELIASAIKNATRCXLLELLNNRHHHEEFQSSSEDDDENEAFEAI
Ga0272425_100040281	F048685	N/A	MYXSDKQNIKINALTHQADVMLRDSEDECIHYQXITILTLNQMKIADLKKNINESIYKQINEINEIDKNCTLLREVIARDETQYEDIKLKNCXTQNEILYHDN
Ga0272425_100040282	F013598	N/A	MNFIINLFDLYNYNVILTVICRLSKERHYISYIIDDENIIVEKTAEMLIQXVY
Ga0272425_100040285	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKQDSLNFYRKIEVITLIDYSKSCDVILTNVKNIDLQAEICFICHKSDHTFKECSNXLKVNALKNDEFNXFTSNSEFNSDSKN
Ga0272425_100040287	F037509	N/A	MILISLFIQVHSTDNKMNIKKFVYLIINNIKRQNNIKKLIESMRIYNHVIAKEFIAQSVASVQID
Ga0272425_100040291	F061400	N/A	MLLKYYNRIMNLNSEKTIIEAXNIYCREEDKDNAIDESDDSFKTDLQNVLHFISV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000402

Overview

Ecosystem & Geography

Associated Families

Sequences