Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000434 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000434 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88404
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (23.91%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

88404

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (23.91%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F035571	Metagenome	171	Y
F036994	Metagenome	168	Y
F042102	Metagenome	158	Y
F061399	Metagenome	131	Y
F061400	Metagenome	131	Y
F070710	Metagenome	122	Y
F086377	Metagenome	110	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100043439	F042102	N/A	MTRSTESESVSIARYDFQNVRRESLLSQNRTASEEEDTNASSDIEEENMNTLLFDHEMIKISISIELNAXISTHEADDIVVFIKYICQQHDIEIKTHNDMIQMLEDVNEINIMLKATQTRLQKEMRNKNVIIHHLETALSRQSTLISEDHFSKSIKLLNSLLFKDSTQNVDNXLSXMQNKLKTNKNHFFIEELKIAYIKSXVDETVIKHIATQMRNMITNSFLEAEEILLIINKMYDDLNHCHTTQRQYLKLYQNKIFFHEFXMKFQRFNAELEYNNETLLDDFQHKISSDLQQAMLNERIMNLNEFVNICMQVDVRLTELNAXSIVKVSAISAARSVASTSSARLTSSISAXKKLRRSNLNSIQKELFKKELCFKCKKSKHRAYDCLKTTQVHEIAANLKNNLFSSK
Ga0272425_100043443	F061400	N/A	MTSESVEQIMLFKYYNCIMNLNFEKTIIEAXNIYHREEDEDNMIDESDDSFKTDLQNVLCSINV
Ga0272425_100043445	F070710	N/A	MTKQSFLXILQYNIRKSLRIQESFLINREVREFDIVAIQKQDCNNNDLQSFSSTHNFFHLVKNSSSQSRTCIYVNKCLKLDQXIVETAESDICLIRILTRNTDDEMQTLKLLNVYNSCSLSITFTERFSIISRLNELLKNDCKQLIIKDFNLHHSHXKERRCFTRHTMIDTLLNVITNARLKLLLKSDVETVSRI
Ga0272425_100043446	F036994	AGCAGG	MXNRMIIEAGSLVDLLIEEVDYRLAIEAGSLVAREREVDRFTGR
Ga0272425_100043449	F035571	N/A	MFKXTCSKLMYVSVSKVSMFTLLNASATXCRVXFXSVSSLHSLFNSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFVFICRRCALHCSFMFSCISRIHTSDFDLITELSIYMLVIMSNLFDFLVKCVSSYFSDANVASXVQAHFA
Ga0272425_100043461	F061399	N/A	MNITYKYVLIFIDCFIKMRHLVLITSMKVEEVINYFYAHVXKHHDLLKFFMSDXDTQFIFDVXKHMCKMLKINIKLSTMYHSEINDQIKKVNAVMKHYLQVFVNYMQNDXAKXLSEVKFIINNASSLIILTSFFLINLSQNSHLDFKSSESLLENLTSQAXNKLINVKKFIKKMKKLTEYLHDEMLIAQIIYKFNVNLSCHSCFKYFVKDEVXLNACNLNITHLAVKLNDCNVDFFKIKHVFKNNSLIIKLNLSTFMKIHSIFYVILLNHIASDFLSNQRQKFQELIIIKNDKRFXYVNSILNFKRDKHYNSSLLKYYIDXKNHFSIXKSFHLLNNCKQALNEYHLVNSVVEESHVLLCVIS
Ga0272425_100043476	F008169	N/A	MFSCSLTEEHFEEFQNRFSQTPDADSSKSRTKSSSAASFIHEDDESFAETIIFLVFYEIXKARSLVLDEETDQLYKLDKQQEDEIKELKTRLQAKENISSDFIYFERSKSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXVKLSYIHSRLFDDAAEITQARRERDCVNFYKIVDDLLKELTQLFDDSNKKVNFRREYYNLIQEFKKFSEFYTQFQRLFFYLDYHEKQLIADLKDKIHLRLRFIXVDQLVQPDFLKEIRFYLIHLNNDQRVIREIKNKIKHVNDLSKTIFHKATVVTQSVNHSKSDQLKLHDAVLTSVKEADILVKSCFICHKSDHSSKECLNRPTRINVVNNEYDCFDFNSNFDSKN
Ga0272425_100043481	F023763	N/A	MLILMSRIKCILLFKEIFXATCQSIQLIINLVEIISNAIVESRQKLTSTSLMMTQLLNXHEILKIFMIYDHLNKVDKVFKLXSSFLESANNDHEFFIIDFVVTLDXVMLLQKVSDXMKNLILIILRKNVFEHIVXSIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDKTSEQNNYSTIVINESSIEVREI
Ga0272425_100043484	F086377	N/A	MIQRFXNQRQRILILDCDSVQISIVHAEAKFFFKFLDEENKDDHLKAIDLNEIFAQILIQIMTKF
Ga0272425_100043488	F009580	N/A	MKRLRLVNKIICIQIFEHNLAQKLNFSCKQQDFFIYTDDITVVDIHDMQSEELLIXAFFSDFAXMLQFAVVAQLSLVANFLNLRNNQNLILNDDNDEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000434

Overview

Ecosystem & Geography

Associated Families

Sequences