Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000507 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000507 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	82203
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (17.50%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

82203

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (17.50%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F023763	Metagenome	208	Y
F028368	Metagenome	191	Y
F036504	Metagenome	169	Y
F042102	Metagenome	158	Y
F048018	Metagenome	148	Y
F066295	Metagenome	126	Y
F100079	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100050729	F008735	N/A	MKEIMIVIHVHALYQTLLSCIQLIFVSFIFKYVKKFLKSRSDENSNRIRRKMNDKRRLIVQDLCNDLSYHCKKLRIQFYINXRTENDEQEQNDNIMLSNLILKLLHYAKDLEXIFNHTLSELFDSTLIVNQEIVRXLHLSERITRRDFNVXKRCRKNKSFIMSKTKLD
Ga0272425_100050730	F001951	GAG	MIITKLRFIDSLKDKRERNEDTVEMTVTKMIIFELKELLVDAETFLTLTNEIMMKMKRD
Ga0272425_100050737	F042102	N/A	MLKAAQTRLQKEMRNKNVIIHHLETASSRQSTSISEDCFLKLIKLLNSSLFEDSLQNVNNXLSRMQNKLKANKNHFSIKELKIIYIESQVSEAVIMHIASRMQDIFLNSFLEVEEVLSIINKMYNDLNHHHMTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDDLQHKISSDLQXAMLNEXITNLNEFVNICMQVNVRLTELNAXLIIKVSAISAARSVTSTLSAQSTSLISAXKKLRRLNLDFIQKELFKKELCFKCKKSKHRAYDCFKTT
Ga0272425_100050739	F023763	N/A	MSFQNCLMLILMLRIECISLFKKIFXATCQSIQLIIDLVEMISDVIVESEQKFTSMSLMITQLLNSHEILKIFVIHDHLDKINKVFKLXSSFLESANNDHKFFIVNFVVTLSXVMLLQKVSDXMKNLILIVLKENVFKHIVXSINFYHNLVIXIIVIKNNLESEDFLKNVECNLIFLKSDKEYIFSDETSEXDSYSTIVIDESSIKVREI
Ga0272425_100050740	F048018	N/A	MILSXASXMIXRRSLSELSMYFLSXKYRXFSCSSHSTKEILLXCRALLQSTSIIXTANLSLISICFHNVXVRVSAKSLSRFRMSXFSXDLTSSTLNSSIFRFMKTRICKSAKIIENRCNXTESKVMIYDXSFMTLMLKMSKMRFLTILRFKTXVFRIV
Ga0272425_100050761	F066295	N/A	MFYEIXKTXSLVLDEETDXLYELNKQQEDEIKELKTRLQAKENTSSDFTYSKRSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCINLYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRFRFIXVD
Ga0272425_100050762	F028368	N/A	LFXVRFRFKFRFKKLVISSKVIKEIEIISLCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLRSLIDSDSVAHMLIHANLVNRVCKKLEIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKLXMNKNEILLNMRNDVIVFPNQLNTSISIFSILLNSKHLSXSRSTSLSSIIQTKTSIMLKRSVSTTTKKESFSIRSIDAALFKTLLNQSKKNQTEVFALFMTDIDREITYNTQCNLNVLNVLLRAYQGXIELVSVSSSDLTQFLFSFINISLFNIIFLSTSHSTRVTNTFSLSLAQPLNIT
Ga0272425_100050764	F001253	GAGG	VTFIKDAMKDVLISSTTSSSDDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRRFDDHYAKKLITHAIYSNLTV
Ga0272425_100050765	F036504	N/A	LIXKCRCKYIALKQLNKLFSFFYSEFTRIFSFLNYNDITLMNNIQNKINNHLQNALSVYLIEFSSLNKLKIFLQDVNNKQRVNYQLRDEQQTVKLIAASKKRFVSSLTLASVSTTNYVXFATFFTLEPEXSRMSIICFNCKASNHLSKNCSQLKTSTLTSHAFISHLNEIIMSKEEKKLFTEKLKNEAKN
Ga0272425_100050767	F010214	N/A	MKVSVLFDYDASSLLCSSLMIFYTTMSRFDSQFKDERRFLCTHDVHDCNVRKAVFSYSMIVIHXAEKYVMKEKCTXXEGKVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFNVXLXSMKENAFXSFSXALNFSCE
Ga0272425_100050775	F100079	N/A	MFKHRHFIHKQYADEKTSLKEEKHKRVSKEXLNYAVXLKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000507

Overview

Ecosystem & Geography

Associated Families

Sequences