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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000518 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81331 |
| Total Scaffold Genes | 101 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (44.55%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F006206 | Metagenome | 378 | Y |
| F025887 | Metagenome | 199 | Y |
| F037509 | Metagenome | 167 | Y |
| F044226 | Metagenome | 154 | Y |
| F061402 | Metagenome | 131 | Y |
| F070712 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100051811 | F025887 | N/A | VTEDDILIFCFINMFDDSFDFKSFTVDVILSNLEKIFRFLALINTEVTDMTFIDESLMLKLCECFDIQSILLSKSKLI |
| Ga0272425_100051817 | F061402 | N/A | MIEFINNNAISSSIEQSTFFLNKNFYSHMNFDLNSIEYEITQARIEADKAENIFEHMK |
| Ga0272425_100051819 | F037509 | N/A | MLLISLLIQIHLIDNKMSIKKFVYLMINNIERQNNIKKSIKSMKTYDHVIARESIAQSVASVKID |
| Ga0272425_100051822 | F070712 | GAG | MNDIKEKKFLIKVRKQVIFAEKRDSLNLYRKIKVTTLVDHSKSCDAILTNVKDIDLQAEIYFICYKSDHTSRECFD |
| Ga0272425_100051823 | F006206 | GAG | LCSQIKVLLKENYFEKLFLINASFISQSNSFSLRSLIDSDFIIYTLIHDKLVNKVCQKLEIQSILLAKEKLIQEYDEKLARKTITHKILLNLTIKSHKKLTMSMLITDIEHHEAILSKL |
| Ga0272425_10005183 | F000597 | N/A | MKDVLISSTMSMSNDSFASESLTIECVLSNNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYAKKLITHAIYLNLTVQDHMIDTASMLITRLSQHQMILEKT |
| Ga0272425_100051838 | F044226 | N/A | MKFSENFNIFLIISMISFYFNKEFYSRMSFNSDTTDYEITCERLEARKAGDIII |
| Ga0272425_10005184 | F003820 | N/A | MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCFEDFASLHRLKNFLQEVNNKQRVNYQLRSQLRTVIIKVTVISDKCTATSLSAVTTSIIKYVKSTIFSTSESVKSSIVCYICKISDHLFKNCSQNKINISTFHAFTFHLHEIIISKNKENEKMFSSEDSEAKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |