NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000533

Scaffold Ga0272425_1000533


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000533 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80373
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (45.45%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F032884Metagenome178Y
F040408Metagenome161Y
F055318Metagenome138Y
F061402Metagenome131Y
F089603Metagenome108Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100053310F040408N/AMYDYKFIFDMYIKNDAMKEEVSAAKERVEMLQDMQNTLMK
Ga0272425_100053315F025887N/AMIENDILIFCFISMSDDSFNFKSFTVDVILSSLEKIFRSFTLINTEVTDMTFINESLMSELCKRFDIQSISLLKSKSI
Ga0272425_100053316F098340N/AMIKVVAYQTLVKNKKIKIFFLIISEINKALSSVEDFMKLNKMIFVMSLDELKKKLSIIYHDFLNVFDKEKTT
Ga0272425_100053320F061402N/AMIEFVNNNAISSSIEQSMFFLNKNFHSHMSFDLNSIEYKITRARIEADKAKNIFKHMK
Ga0272425_100053330F089603AGGMYINASQIRKKIAEIKTETETTVIFTHELIRYSKATSVYDKIITTKAKLQAISDAIVICSEKALKNSEI
Ga0272425_100053331F055318N/ALNDIEALRDDEALCVDRMQSFRDRADFDNLNAYATSNLHADEKVK
Ga0272425_10005335F032884GAGMTIRNERVEREGCERTKKNESTMARVEGERLYAQTIDVIDQREDIKQRL
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