NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000546

Scaffold Ga0272425_1000546


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000546 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79491
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (52.58%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F013598Metagenome269Y
F017767Metagenome238Y
F017941Metagenome237Y
F021896Metagenome216Y
F025887Metagenome199Y
F036036Metagenome170Y
F055319Metagenome138Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100054670F036036N/AMLISLIHHLFSCFDQSFTSEDQCLIYLFRYILDSINLQAFANAFIFNDVKVEVHMRIKVLVHKEEDQEND
Ga0272425_100054671F013598N/AMNFIIDLSDLSEYNIILTIICRLSKERHYISCITDDENITVEKTAEMLIQ
Ga0272425_100054672F017941N/AMKIADLKKNINESIYKQILETNEINENCTLLRKVIAKDKTQYENIKLKNC
Ga0272425_100054676F021896N/AMIKNNLESEDFLKNVECNLIFLRSDKKYIFSDEMSERDNYSTIVIDESSIKVREI
Ga0272425_100054679F055319N/AMIEVRVKRLRLVDKIICIQIFERDLAQKLNFFREQRDFFIYTDDITVVNVHDMQSEELLI
Ga0272425_100054680F001951N/AMMTMIKFRFIDSSRNKRERDKNTVETTITKMMIFEFKELLVDAEIFLTLMNETMMKMK
Ga0272425_100054681F102181N/AMKEVMIIIHIHALYQTLLSCIQLIFVFLILKYVKKLLESKSSEDSDRVCKRVNNEKRLIIQDLCDDLSYHCKKLRIQLYID
Ga0272425_100054686F025887N/AMSDDSFDFKSFTVDVILNNLEKIFRFLALINTEVTDMTFIDESLMSKLCERFDIQSILLLKSKSIQLYDEISD
Ga0272425_100054695F017767N/AMKDVLISSMMSMSNDSFASESLTTECVLSSNEINYSLKSLIDIEAADYSFIDEVIVQIVC
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