Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000623 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000623 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	74312
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (17.95%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

74312

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (17.95%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F004755	Metagenome	424	Y
F010214	Metagenome	306	Y
F028667	Metagenome	190	Y
F029296	Metagenome	188	Y
F040408	Metagenome	161	Y
F044227	Metagenome	154	Y
F048017	Metagenome	148	Y
F049323	Metagenome	146	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100062311	F028667	N/A	MTRDSESVESXTTHLLKSTVSKRVFLISVNASARSQNADISXNIKTEEQLCQXVHNQSNEIIKMLNELKSQRDMTLKLNEQXIIVQVKHDKRLNQLEIKLMIIDTLEEINKHYQKKMLNLKNKLKEVLHSANQLRSCQSTESQVSTKSLPRQSIKNHTRCKSFTLFNNDHHKSFKFLNSSVFIDEDESTXNNXRIKMNDKLQTNVDHFNNENICIVYVISRLEDDAAEHIFARHXHDALHSYILIDKLFKHLKEIYDELNRNQKCRRKYNALKQADKSFNVFYFNFMKLFSYLDYDNCILMNDLQNKINNCLQNALSVCSKNFTSLTRLRIFLQNVNNKQRVNYQLRSERCTVIVIIIIKVTIVSDKCVATSLSVTTLIINYVKSIIFFISESAKSSIICYTCKTSSHLSKNCSQNKINTSAS
Ga0272425_100062333	F044227	N/A	MQLQINSSDDEACTHALLELIASAIKNATRCXLLELLNNHHHHEKSQSSSEDDDENEALEAI
Ga0272425_100062344	F040408	N/A	MYDYKLIIDIHIENDAMKEEVSAAKEHVEMLQDVQNTLMQXX
Ga0272425_100062347	F000597	N/A	MSMSNDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFINEVTAQIVCNQLQIKSLTLIKAKSIREFNDYYAKKLITHAIYLNLTVQDHTIDTASMLIT
Ga0272425_10006235	F048017	N/A	MFIYHQTLKIFMKNKQLSXQQVNYLNILSKFNFQIIFKLDKMNTKVDALIRMSLMNISESAQRLEDHFQTILTLDRVDVLSIESKANLYQXVXMINQTDELCSEYKQAMKENKLKFHITKLKNCKIIDDVLFRKDLL
Ga0272425_100062352	F000597	GAGG	VTFIKDAMKDVLIFSMISMSDDSFASEFLTTECVLSSNEISYSLKSLIDTEAADYLFINEVIAQIVCDQLQIKSLTLTKTKSIREFNHHYAKKLITHVIYLNLKIQDHTVNITSMLITXLKQH
Ga0272425_100062367	F010214	GAG	MRVSVLFNYDASSLLCSSLMIFYTTMFRFNSXFKDERRFLCTCDAHDCNICRAVFSYSMIVIHXAEKYVMKERRIRXRDRVXLYXVTLFFSXFDLCHVDVEXIVSINVRLQSFNVXLXSMKENAFXSFSXALNFSCE
Ga0272425_100062368	F044227	N/A	MQLQIKSSDDEACTHALLELIVFAIKNATKCXLFKLLNNHHHHKESQSNSENDDENEAFEAI
Ga0272425_100062375	F049323	N/A	MMKEMNEESAEQXEEVLRMTQRIQQKCARFKLSIASXLALIKLIRIRSELXLIQTCS
Ga0272425_100062376	F029296	AGCAG	MNKHRQDVIYEVDDQVXLVFENIKITRSCKDLKDKQLNFYSITVKVEIFYRLQLSRSMKHIHSMFSLKCLXSSSNNSLLKQYSEFSRSMIIEENEEHXEVNDILNFRRYRERLQYKVKXIEVNHDNEXYYVDKEKFNDSKKVLNEFHKLYLNKSH
Ga0272425_10006238	F004755	N/A	MNESNXAIYILDYSMTQLRSLKLDANMTVSIFIELLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIIDLKDKINSHLRFIXVDQLVQSDSLKEIRFYLIHLNNDQQVIXEIKKKLKRVDDLSKTIFHKATVVTQSVNHSKSDQSKSRDAILTNVKEADISFESCFVCHKSDHSFKKCLDRSTKINAVNNEYNRFNFNSNFDSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000623

Overview

Ecosystem & Geography

Associated Families

Sequences