NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000657

Scaffold Ga0272425_1000657


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000657 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72495
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (17.14%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F010214Metagenome306Y
F036035Metagenome170Y
F038484Metagenome165Y
F040408Metagenome161Y
F044227Metagenome154Y
F064254Metagenome128Y
F070710Metagenome122Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100065711F064254N/AMXKLYEFISFLFFLSFIXFFDDVTAXNXFSMLVESIIXMIIIIALMISKSFLKFMMFSSHCIAFHSTFHLRHVNRMCLIDIQSLSHLHVIITTLSTHLSCKNXLKSIFLVRSCINSALXDFAXFLCKCKC
Ga0272425_100065717F094622N/AMFTLKQRVYLNDSNSKDNVTTITMRMNXKLNKRLRELTLVITHHDELKELVAKTKHLTDVATANQEYYEKIYKVYSDSQTSLKTVKAMISTKDQTRLQQVQITHESIQS
Ga0272425_100065718F036035N/AMKDRTKDDAMXKEHHELEKASRNHKHDDNDHSNNTLNKHTESISDCDIIKELNERERK
Ga0272425_100065720F070710N/AMTKQSFLRILQYNIRKSLRIQESFLIDKEVREFDIVAIQKQGRNNNDLQSFSSAHNFFHLVKNSSSQSRTCIYVNKCLRLDQXIVETAESDICSIRILTRNTDDETQMLRLLNVYNSCSLSTTFTKKPLIISRLNELLKNDCKQLIVEDFNLHHSH
Ga0272425_100065722F038484N/AMRLILMCIARMLSAFXRSSCIFIILLLRCNLCAEIVLTSATRSLYFFHRXFHXSLXYCVIAMLSFVEIIVKKRVCHLHLNCIFASFXMKTFRSTIFLMTSEREMTRLTFVKRAHISLHAYLISCVRSLTXLCSVILFCSMFKXTCNELMYVSVSRVSMFTLLNTSAMXHKVXFXSVSSLCSLLNSSSFLSRXCQTDASNVISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFISICXRCASHCSFMFSCISRTHMSDFDLITKLSICMLVIMSNLFNFLVKCVSLYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272425_100065724F044227N/AMQLXMKSSDDEACTHALLELIASAIKNATRCXLLKLLNNHHHHKESQNSSKDDDENEALEAI
Ga0272425_100065732F010214N/AMRMSVLFDYDTSSLLCSSLMIFYTTMFRFNSRFKDERCFLCIHDACDCNVCRAVFSYSMIIIHXAEKYVMKERCTXXEDKVXLYCVILFFFXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXLFSXALDFSRE
Ga0272425_100065741F040408N/AMYDYKLIFDIHIKNDAMKEEVSAAKKHVEMLQDMQNTLIQXX
Ga0272425_100065748F002432N/ALQNDXAKXLSMMKFSENFNIFFVISMISFYFNKDFHLRMSFNSDMTDYKITRKRLEARKVNDIVIQMKKLLIFDRQQLEKTKQITENQVNKHKXDIIYKIDDXVXLSFRNVKTMRSCKNLKDKQLKLYQITIKVEIFYHLRLSVSMKQLHLMFSSKLLRSYFDDLLSEQHSESFRLLTIKDDEHXKIDDILNFRCYQDXIQYKIKXMRLDXNNE
Ga0272425_100065758F038484N/AMRSILMYIARMLFAFXRSSRIFIVLLLRCNLCAEIALTSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRMCHLHLDCIFTSSQMKTFRSTIFLMTSKREMTRLTLVKRTHISLHACLISCVRSSTQLCSVTLFCSMFRXTCNELMYVSVSRVSMFTLLNASATXRRVXFXSVSSLRFLLNSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFVFICRRCAFYRSFVFSCISRTRTSDFNLITELSICMLVIMSNLFDFLVKCVSSYFSDANVASXVQAHFAQTSCALLSILQISSVNLS
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