NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000662

Scaffold Ga0272425_1000662


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000662 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71896
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (16.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F011463Metagenome290Y
F028367Metagenome191Y
F038484Metagenome165Y
F055318Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10006621F011463N/AIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLRLSVSMKHLHSMFSLKLLQSYSEDSLSEQHAESLRLIIINDDDDEHXKIDDILNFRCYQDRIQYKIKXKDLDRDNEXYYVNKDEFNDFEKVLNEFHMLYSRKSR
Ga0272425_100066215F055318N/AMLHDDEALCINRVQSFRDRADFDNLNAHATSNLHADEKVK
Ga0272425_100066217F038484N/AMCIARMLFAFXKSSRIFIILLLRCNFCAEIVLTSATRSLYFSHRXFHXSLXYCIIAMLLLVEIIVKKRMCYLHLDCIFASSXMKIFRSTIFLMMSKREMTXLTFVKXTCISLHACLISCVQSLTQLCSVILFCSMFRXTCSELMYVSVFKVSMFTLLNASATXHRVXFXSVFNLHSLLNSSSFLLRXCQTDASNAISDLTIAEYTCFAFVKIASHVKTSRRLSISILVTXFIFICRRCASHCSFMFSCIFKTCTFDFDLITELFICMLVIMLNLFDFLVKCVSSYFSDANVVS
Ga0272425_100066229F028367N/ALYKLDEILLKENYFEKSFLINVHLILQNQSFNLHSLINNDLIIYIIIHINLVEXVCEELEIQFISLIKEKLIKEYDEKIFKKIITHKILLNLIIESYKKLMIFMLITDINHHEVILSKLXMNKNEILLNIQNDVIVFLN
Ga0272425_100066235F010214N/AMXCLSKLLMKVSVLFNYDTSSLLCSSLMIFYTTMFXFNSQFKDKRRFLCTRDAHDCNVCRAVFFYSIIIIHXAEKYVMKKRCIXXKDRVXLYXVTLFFSXFDLCHINVEXIVSINMXLQSFNVXLXSMKENAFXLFSXTLNFPRE
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