NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000710

Scaffold Ga0272425_1000710


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000710 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69272
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036994Metagenome168Y
F041516Metagenome159Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100071011F036994N/AMKNVIEADSLVDLLIEEIDHRLIIEADSLVAHEREINQFTDR
Ga0272425_100071012F036994AGCAGMXDKMIIEADSLVDLLIKEINYRLVIEADSLVACEREIDXFTDR
Ga0272425_100071017F086376N/AMIRSTESESVSIAHYDFXNVKKESLLSQNXTASEEEDTNASSNTEKENMNILFFDHEMIKISISTELNAXISIYEADDIIVFIKYICQQHDIKIKIHNDMIQILEDVNEINIILKATQTRLQKEMRNKNVIIHHLETASSQQSTLIFENHFLKSIKLLNSFLFEDLTXDVDNXLFXMQNKLKINKNHFSIKELKIAYIES
Ga0272425_100071018F041516N/AMIQKVIHIHEAYNLSFKDHEIIHEKENFSDIKKTLHMLKESILLQSCTSS
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