NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000714

Scaffold Ga0272425_1000714


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000714 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68810
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (45.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F013598Metagenome269Y
F089603Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100071460F003820N/AMKLFNYLNYDDRILMNDLQNKINNHLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVPDKCTAISLSMTTSIINYVKSTLSSIFELARSSIICYICKILDHLFRNCSQNKINTSASYAFTLHLHEIIISKNKKNEKMSSFKNSEAKN
Ga0272425_100071461F000597N/AMKDVLISSMMSMSNNSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKTKSIREFDDHYAKKLITHVIYLNLTVQNHTIEIAFMLITRLNQHQMILEKT
Ga0272425_100071465F013598N/AMNFIINLPDSYDYNAILTVICRLLKERHYISCITDDEDITVEKTAEMLLQ
Ga0272425_100071479F089603AGGMYIDASQIRKKIAEIETETETTVIFTHEFVRYSKATSVYDKIITTKAKLQAISDAIAICSEKA
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Institute for Fundamental Biomedical Research
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