NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000760

Scaffold Ga0272425_1000760


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000760 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66378
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015284Metagenome255Y
F015552Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10007607F015284N/ALFNYNILKINKDKSLLINKYELNATLQIFQNNIKEFLIKKEKLQIFIKKIDEYIKEHYNKLLQKHLKVTKTL
Ga0272425_10007608F007459N/AMYFSCFAINFFLHAIIYKYLINLLIIISIELYLFLVAKFVNLDNLIIKFIVTLSYNNLNN
Ga0272425_10007609F015552GAGMTQLALNAKISNTTKIILFFVNYNKKLNLFKKERTHLLTQLIIKKIATLKKIYDNILKMQERLIKY
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Institute for Fundamental Biomedical Research
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