 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000788 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65408 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (24.32%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F004755 | Metagenome | 424 | Y |
| F009377 | Metagenome | 318 | Y |
| F009580 | Metagenome | 315 | Y |
| F011463 | Metagenome | 290 | Y |
| F017767 | Metagenome | 238 | Y |
| F038009 | Metagenome | 166 | Y |
| F086377 | Metagenome | 110 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100078823 | F086377 | N/A | MIQHFXDQRQRISILDCDSIQISIVHTEAKFFFEFLDEKNRDDCLKVTDLNEIFAQIFIQITTKF |
| Ga0272425_100078824 | F038009 | N/A | MIKASSFQLNYVKLYKKLIELICSKDNRSSKEKRILILDFXXVFFLNSLKNTIRNFLFQTRDKIKRSLFLVNKLSINXLLVSKXEVILLLVSRXKTELLLVSELKTELLLVSKLKTELLLSSKXETRLLLASKLSVELLLVSNL |
| Ga0272425_100078826 | F009580 | AGTAG | MICIQISERNLAQKLNFFCEQRDFFIYIDDIIVVDVHDMQSEELLIXAFFNNFAQMLQFAIVTQLLLVADFLDFRNDQSLILNNDNNKV |
| Ga0272425_100078827 | F001951 | GAG | MIITKFKFIDSSRNEKERDEDTVETTVTKMMIFEFKELLVNAKMLLTLMNKTMTKMKQD |
| Ga0272425_100078829 | F094625 | N/A | LIKSLVQSSLXYYERSTLSATFSYIEISSNYSFAQMKLSHNLLIDDERAVKQFTQSMIENSVEIFRAMQELQNQVQQHDVITSSLFIVFSFSVYIKLNSQSLAMIFQIVAQILNNQSFLVVHFSANSVAVSILIRFEKLLNISEYERNKDXLNVXEQSLIQRMNVNDNHYFFHQVKIVYVKSXFIIDKKSYNLMS |
| Ga0272425_100078831 | F017767 | N/A | MKNVLISSMMSMSDDFFASESLTTECVLFSNEISYSLKSLIDIKAADYSFINEVIAQIVCDQLQIVETVSRI |
| Ga0272425_100078838 | F011463 | N/A | MKLIIEVQINKHRRDITYEVDDXIXLSFRNVKTMRLCKDLKDKQLDLYQITVKVSIFYHFRLSVSMKHLHLMFSSKLLQSYSENLLSKQHSESLRSITIKDDEHXKINDILNFRRYQGRIQYKIKXTDLNKDNEXYYVNKGKFNDSEKVLNEFHKIYSSKPR |
| Ga0272425_100078845 | F004755 | N/A | MIFXNEELAQLFNDLNKKVNFHRKYYNLIQEFKKFNEFYTQFQHLSFYLNYHKKQLITDLKDKIHLHLRFIXVNQLVQYDFLKEIHFYLIHLNNDQRVIXKIKNKIKCVDDFSKTIFQKVTVITQSVDHLKSDQLKSCDAILTSVKEADILVESYFICHKSDHSFKECFNQSTRINAVNNEYDCFNFNSNFNSKN |
| Ga0272425_100078859 | F009377 | N/A | MIRSTESESVSIARYDFQNVRRKSLLSQNQTASEEEDTNVSSDTEEKNINTLLFDHEMIKISISTELNAXISTHEADNIVVFIKYICQQHDIKIKTHNDMIQMLEDVNEINIMLKAAQMHLQKEMRNKNMIIHHLKTASSRQSTLISEDHFLKSIKLLNSSLFEDSLQNVNNXLSRMQNKLKTNKNHFSIKELKIVYIESRVNEVAIKHITSCMQDIFLNSFLKVEEVLSIIDKMYDDLNHHHTTQQQYSKLYQNKIFFHQFXMKFQRFSAKLEYNNETLLNNLQHKINSDL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |