Scaffold Ga0272425_1000953

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272425_1000953

Scaffold Ga0272425_1000953

Overview

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000953 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	58539
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (53.85%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058565	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100095373	F058565	AGAAG	MMMNCMNCSNVDSKMIMSDVNSLQENKDVKLKYLRDDEENITNIIDLLIKISTLEKEKSKNHL

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