NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001094

Scaffold Ga0272425_1001094


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001094 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53577
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (38.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F010214Metagenome306Y
F020121Metagenome225Y
F028978Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100109452F020121GAGMKKLTEHLCDEMFITQIIYKFNVNLSRHSCFKYFIEDEVXLNACNLSIAHLAVKLNDHNVDLFKIKHIFKNNSLIIKLNLSTFMKLHLIFHVILLNHITSDFLLNQYQKLQELIVVKNDERFXCINSILNFKYDKCYNSSLLKYYIDXKNHFFTXKSFHLLNNCEQALNEYHLVNSVVEESHVLSCMMFQCQY
Ga0272425_100109456F010214N/AMXCSSKLLMKVSVLFDYDASSLLCSSLMIFYTMMSRFNSXFKDERCFLCTCDAHDCNVRKAVFFYSMIVIHXAEKYVMKEKYTQXRDKVXLYXVILFFSXFDLCHVDVEXIISINMQLQSFNVXLXSMKENAFXLFCXALNFSRE
Ga0272425_100109460F028978N/AMKIADLEEKKNDESIYQLILEANKIDENCTLLCEAIARDETQYEDIKLRDCXVQNEILYQSDFLXILFNEHLQMKLI
Ga0272425_100109462F001253GAGVTFIKNAMKDVLISSTMSSSDDFFASKSLTTKCVLSNNEISYSLKSLIDTEAADYLFIDELIAQNVYDHLQIESLSLTKLKSIRRFDDHYAKKLITHAIYLNLTV
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Institute for Fundamental Biomedical Research
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