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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1001100 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53425 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (23.08%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F017941 | Metagenome | 237 | Y |
| F018839 | Metagenome | 232 | Y |
| F024448 | Metagenome | 205 | Y |
| F046102 | Metagenome | 151 | Y |
| F074202 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100110013 | F018839 | N/A | MIAKVVTFNHLTSDLYVAVSVIAMFIELKDEAKLTELNDFMILLNEDDFSLSRVTTEEINLFSI |
| Ga0272425_100110014 | F046102 | GAGG | VTFIKDVMKDVLISSTMSSSNDFFASKSLTTECVLSSNEISYSLKSLVDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIREFNDHYAKKLITHAIYSNLTVQNHMKRFIFMLITXLNQHQTILEKTXMNKIKMTIDMKDDRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSTF |
| Ga0272425_100110031 | F005901 | N/A | MNDKLIINVDQFNDETICIVYMMSRLEDDAAKHIFARRYFDSLNSFTSIYELFNHLKEIYDELNKNQKSRREYNALRQADKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSKNFTSLTRLKIFLQNVNNKQRVNYQLRSERCTVIVKVTVVSDKRVATSLLMTTLIINYVKSITSFISESARLTIICYTCKISSHLSKNCSQNKVNTSAS |
| Ga0272425_100110032 | F024448 | N/A | MKDVLISSTTSMSNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHMIDTAFMLITQLNQHQMILEKTXMNKINLVIDMQIDSLRFSNFISSQKLIVLLSSNKTITKQKSLTSTHILKRFFTFVTSQFSQKSFSFS |
| Ga0272425_100110034 | F017941 | N/A | MKIADLKNNINESIYKQILETNEINENCTLLREAIARDET |
| Ga0272425_100110050 | F074202 | N/A | VYEXFLFTCQKEIYMYVEKCLRLFYHXLRLQSLSLTKLLEKCASNFMKTVDCKMNCKTIYISFLLMSSXLFCSDNAFNLALFLDDDFFLKLVISKLRLRVETELNFKEKVILRCSFFTAKDDNLDSSFNLKIATNFIKFRXFIIFHNDXLFFFNLFLSVKCDVTXSKXADAENXAFKSEVVVDLAVINLAVLNNVDNESSLKFENLDXEDGMKRSTSSVSSFFSSDIVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |