NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001101

Scaffold Ga0272425_1001101


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001101 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53360
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (23.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F028667Metagenome190Y
F036504Metagenome169Y
F042102Metagenome158Y
F057012Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100110128F036504N/AMIYVKLTQDACLQQLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDNITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQXVNYQLRDEQXTVKSIAASKKRFVSSLTSALALITSYVQLTTFFTLESEQSRMSIICFNCKVSSHLSKNCSQLKTSTLTSHAFISRLNEIIMSKEKKLFTEKSKNEAKNCYERTKVE
Ga0272425_100110130F042102AGAAGMNASSNTEEKNTNALLFDHEMIKISINTELNAXISTHEADDIVVFIKYICQQHDIKIEIHNDMIQMLEDVNEINITLKITQTRLQKENRDKNVIIHHLEAALSXQSTSISEDXFLKSIKLLDSSLFEDSAQNVNNXLFQMQNKLKINKNHFSIKELKIAYIESQVSEVAIKHIASHMQNIFLNLFLEVEEVLLMINKMYDNLNHYHTTQRQYLKLYQNKIFFHEFXMKFQRFSAKLEYNNETLLDDFQHKISSDLQRAMLNEXITDLNEFINICMQVNVKLTKLNAXSVVKASVTQAARFVSSTLTIQLTSSVSSXKKLRRLNLDSI
Ga0272425_100110131F057012N/AMTENDIFIFCFISMSDDSFDFKSFTVNIILSSLEKIFRFLALIDTEVTDMTFINESLMSELCERFDIQSISLLKSKLIXLYDEIFDXKSITYALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQILVNSANDXLISSLKIQTSKSVISKASSQSAFYRSESSEICKMK
Ga0272425_100110141F028667GAGMTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLKETNKRYXEKMLNLKNKLKEVLHSANQSRSRQSTKPLSRQSIENHTRRKSFTLFDNNHHKSFKFLNSSVFIDEDESTXDSXRIKMNNKLQTNVDHFNNENICIIYVISRLEDDAVEHIFAXCXHDALHSYTSINELFEHLKEIYDELNRNRKCCREYNTLRQADKSFNVFYFDFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVISDKCAAISLSVMTSIINYVKSIFSSISESARSFIICYICKILDHLFKNCSQNKINTSASHAFIFHLHEIIISKNKKNEKMSSFENSEAKN
Ga0272425_100110143F008169N/AMPSRSLTEEHFEEFRNRFSQIPDAGSSKPRTESPSAASFIHEDDESFAETVIPFVFYETXKAXSLALDEETDRLYELGKQQEDEIKELKARLQVKENTSSDFTYSERSRSQKIPDPSLFTDEKNPTXKNWYGKIQDKLEINVDLFSNERVKLSYIHSRLFNDAAEITQARRERDCVNLYKIIDDLLKELAQLFNDSNKKVNFRREYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHLRLRFVXVDQLVQPDFLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRATVVTQSVDHLKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECFDRSTRINAVNNEYDRFDFDSNFDSKN
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