NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001269

Scaffold Ga0272425_1001269


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001269 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48742
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F061399Metagenome131Y
F064252Metagenome128Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10012692F061399N/AMNYVNVLSLSIFMNIIYRYVLVFVDHFIKMRHLVLITSMKVEEAINCFYAYVXKHHDLLEFFMSDRDTQFIFDVXKHMCKMLKIDVKLSMMYHSEINDQIEKVNAVMKHYLQVFVNYMQNDXVKXLSEVEFVVNNTSSLITLASFFLINLSQNLCLDFKSSESLFKNLTFQAXNKLINVKEFIKKMKKLTEHLRDEMLIAQIIYEFNVNLSYRSYSKYFIEDEVXLNACNLSIACLAVKLDNHNIDLFKIKHVFKNNFLIIELNLSTFMKIYLIFYVILLNYIASDFLSSQRQKSXELVIIKNDERF
Ga0272425_100126941F009580N/AMIYIQISERNLAQRLNFSCKQQDFFIYTDDVTVVNIHDMQSEELLIXAFFSNFAQMLQFAVVTQLSLVADFLDLRNDQSLILNNDNDKA
Ga0272425_100126943F094625N/AMKSSHNFLIDDERVVEQFTQSVIENSIEIFCVMQELQNQVQQHDVITSFSFIIFSSSVYIELNSQSLVIITQIIAQILNNQSFLIVHFSANSVAVFITSRFKKLLDISEYERDKDQLNAXKQSLIQRMNMNDDHYFFHRVKIIYVESXLIIDKKIHNLMS
Ga0272425_100126949F064252GAGMTIDTQEETIIDLREKVLSLKKRQRSANQSQSRQSTKSLPRQSIKNHTRRESFTLFDNDHHKFFKFSNSFIFIDEDELTXNSXRVKMNDKLQANVNHFNNENTCIVYVISRLEDDAAEHIFVXRRHDASHSYISTYELFEHLKEIYDDQNKNRKCHCEYNALRQAEKSFNVFYFDFMKLFSYLEYDDRTLINNLQNKINNRLQNALLICLKDFTTLHRLKSFLQSVNNRQQVNYQLRSERCMIIVKVIVTPEKRATSLSAVMTSIIKYVKSTIFSTFESVRLSIVCYICKTSSHLSKNCSQNKINTSASXAFTSRLHEIVISKNKENEKMSSFEDSEAKN
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