NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001588

Scaffold Ga0272425_1001588


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001588 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41830
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.63%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F032884Metagenome178Y
F036035Metagenome170Y
F038008Metagenome166Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10015882F005901N/ALHSYILIDELFEHLKEIYNELNKNRKCHCKYNALKQADKSFNVFYFDFMKLFSYLEYDDHILMNNLQNKINNHLQNALLVCSKNFTSLTRLRIFLQDVNSKQXVNYQLRSERCIVIIKVTVVSDKRATLLSVTTLIIDYVKLTIFSIFKSARLLIICYICKTFNHLFKNYSQLNKIDTFASCAFILYLHEIIILKNKENEKMSFENSEAKN
Ga0272425_100158822F038008N/AVTFXSESSKIIIVTNKKMLIKQHNLNIIALKQRVYSNDSDSRDDVTAIVMRMNXELNKRLKKLTLVIIHHDELKELVARMKHLADVVIVNQECHEKIYKVYSDNQTSLKTVKAMISTKDQTRLQQVQTVHESIXF
Ga0272425_100158824F036035N/AMKDRMKDDATXREHHELKKASRNHECDDSNHSNDTLDKHTESISDCDIIKESDERERK
Ga0272425_100158841F094622N/AMFTSKQRVYSNDSDSKDDVTAIMMKMNXELNKRLKESTLVITHHDELKELVARMKHLADVATANQECHEKIYKVYNDNQTSLKTVKVMISTKDQTRLQXVQIAHESIQS
Ga0272425_100158843F032884N/AKMTIRNERVEREECERTKKNESTMTRVEKERLYAQTIDVIDQREDIKQRLWSDYM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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