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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1001693 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40087 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.89%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009377 | Metagenome | 318 | Y |
| F021452 | Metagenome | 218 | Y |
| F032884 | Metagenome | 178 | Y |
| F035571 | Metagenome | 171 | Y |
| F038484 | Metagenome | 165 | Y |
| F044227 | Metagenome | 154 | Y |
| F055318 | Metagenome | 138 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100169320 | F021452 | AGAAG | MQLSXISSDAXNCNKFEKQSVFVKVVTENDILIFCFISMSDDSFDFKSFTVDVILSNLEKIFRFFALIDTEVTDMTFINESLMSELCECFDIQSISLSKSKLIQSYDEISDXKSITHALYTLIMIQEHKNEMMLLLITHLD |
| Ga0272425_100169321 | F009377 | N/A | MIKININTELNAXINTHEADDLVAFIKYICQQHDIKIETHNDMIQMLNDVNKINIESKAINIKLKATQTTLNVVQTRLQKEMKKKNVIIRHLEATSSRLSTLILKDQFLKSIKLSDSSLFKDSRQNVNNXLFXMQNKLKTNKNHFSIKEMKIAYVKSXVSETMIKHIALRMRNMITNSFLEAEEILSIINKMYNDLNQRHTTQQQFLKLYQNKIFFHEIXMKFQRLSAKLKYNNETLLNDLQHKISSDFQRVMINEXTMNLNEFINICMQVNV |
| Ga0272425_100169326 | F055318 | N/A | LNDIKALRDDEALCVDHVQSFRDRADFNNLNAHATSNLHADKKVK |
| Ga0272425_100169329 | F044227 | N/A | MQLQMKSSDDEACTHALLELIASAIKNATRCXLLELLNNRHHHEESQSSSEDDNENEALEAI |
| Ga0272425_10016933 | F035571 | N/A | MFTLLNASATXCRVXFXSVSSLHSLLDNSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRRLSVSILVTXFVFICQRCASHCSFMFSCIFRTHTSDFDLITELFICMLIIMLNLFNFLVKCVSSYFSDANVASXVQAHFAQTSCTLLNVLQISSVNLS |
| Ga0272425_100169330 | F038484 | N/A | MCIARVLSAFXRLLRIFIILLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKRVHRLHLDCIFASSXMKTFRSIIFLMTSEREMTRLTFVKRTRINLHAYLISCVRLLIQLCSVILFCSMFKXTCSELMYVFASRVLMFTLLNTSATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNVISDLTTAEYTCLAFVKITLHVKTSRXLSVSILVTXFAFICQRCALHCSFVFSCISRTHTSDFDLIIELSICMLVIMSNLFDFLVKCVSSYFSDANVASXVQAHFA |
| Ga0272425_100169335 | F032884 | N/A | MHALXLFKKMTIRNERVERKECEKTKKNESTIMRVERERLYVQTIDVIDQXKDIKQRLXSDYM |
| Ga0272425_100169340 | F055318 | N/A | MLCDDEVLCIDHMQSFRDCADFNNLNAHATSNLHADEKVK |
| Ga0272425_100169344 | F044227 | N/A | MQLQLKSSDNETCIHALLELIAPAIKNATRRQLLKLSNNHHYYEESQSSCKNDDENEASETI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |