NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1001800

Scaffold Ga0272425_1001800


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1001800 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38355
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032884Metagenome178Y
F036035Metagenome170Y
F065268Metagenome127Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10018002F032884GAGMTIRNGRVEREECERTKKNESTMTRVEKERLYAQTIDVIDQREDIKQRLXPGYM
Ga0272425_100180032F036035N/AMKDRTKDDAMQRKYHELKKASRNHECDNSDYLNDTFDEHIKSISNCDVIKESNKREKE
Ga0272425_100180043F065268N/AMTRSSESASIACYDLQNARRESLLSQNXTASEEEDMNVSSNTEEKNMNVLFFDHEIIKISISTELNAXISTHEADDIIVFIKYIC
Ga0272425_10018005F104134N/AMSLLLSLQSDMIRFLXFINTSAILCKICSIDFFCIFFISLLFIILIMISYFLQSDDESSLRHYFFVVISSFVTFAHDVIFIERRMLSYVCNCLLSSXIDVFSFYTFFAMNVFXFAXCFSSESSQRRXISFNAISFHEXSLLFSFSNVDIFISRSIMLVTFSSSLHECFNFTSLFSCNELTSLAIIFESALLQFMQFIII
Ga0272425_10018007F032884N/AMTIRNERVEREECEETKKNKSTMTRIERECLYAQTINVIDQXEDIKQRLXSDYM
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