Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1001912 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1001912 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36769
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (36.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36769

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (36.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F087979	Metagenome	109	Y
F089602	Metagenome	108	Y
F094625	Metagenome	105	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100191215	F104134	N/A	MHTLCVSTAKIQRAMCIDLMISFAHVXVFFRFAQASELTAXRKMSSLFSLQSDMIRFLXSVNTSAIFCRICSIDFFCISFISLLFIILIMTSYFLRSDDKLSLRRYFFITISSLVTFAHDVIFVERHVLFCVCNCLLSSXTEIFNFYTFFMMNVFXFAXCFSSELSXRCXISFNAIFFHEXSLLFSFSNVDIFISRSIMLAMFSSSLHKHFDLASLFSCDKSTSLTIIFESALLQFMQFIVVSLFSRFTLSCL
Ga0272425_100191222	F087979	N/A	MKEKNESLTFIYMNXAESRLDSSFINLRLQKFMHMTEIIETELLRLN
Ga0272425_100191223	F094625	N/A	MIENSVEIFRAMQKLQNQVRQHDVIISFSFIIFSSSVYIELNSQSLMMITQIVAQILNNQSLFIVHFSANSVAVFIASRFKKLLNIFKYERDKDXLNAXKQSLIQCMNVNNDCYFSHRVKIIYVESQFIIDKKIHNLMNQYXVNDLCIIFIFAN
Ga0272425_100191224	F089602	N/A	MKDKXLSFIKILSEEDDDLSEIINIAFQTVNQXEIFHQRIFFLLIKEIVVVDKAIHVLLQSFTKI
Ga0272425_100191225	F001951	GAG	MIMTKLRFIDSSRDERERDEDTVETTVTKMMIFKLKELLVNAKMLLTLINETMMKTKRD
Ga0272425_100191226	F009580	GAG	MICIQISEHDLAQKLNFFCKQRDFFIYTDNVTIIDVHDMQSEKLLIXTFFSNFAXMLQFAVVAQLSLVADFLDLRNDQSLILNNDNDKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1001912

Overview

Ecosystem & Geography

Associated Families

Sequences