NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1002160

Scaffold Ga0272425_1002160


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1002160 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33551
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (26.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100216011F008735N/AMKEIMIIVHVHALYQTLLSCIQSIFVSLIFKYVKKLLESRSNDDSNRIRREMNDERRLIIQDLCNDLNYHHERLRIQLYINXRTENNEXRXSDDIMLSNLILKLLHYTKDLNXIFNHTLSKLFNSMLIVNQEIVRXLHLSERITKXDFNVXKCCRKCKSFIMSETRLN
Ga0272425_100216016F036994AGCAGMXDRMIIEADSLVDLLIEEIDYRLALEADSLVAREREVDXFTDR
Ga0272425_10021603F036994AGCAGMXNRMIIEADSLVDLLIEEIDYRLVIEADSLVACEREIDXFTDR
Ga0272425_10021604F036994AGCAGGMWDRVVIEAGSLVDLLIEEVGYRLVLEAGSLVARGREVDRSTGR
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