NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1002247

Scaffold Ga0272425_1002247


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1002247 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32543
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021216Metagenome219Y
F038008Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100224712F038008N/AMMTFXSKLSRIVIVANKKMSISQHHLDIFTLKQRVYLNDSNSRKNVMMIAMRINXKLDKRLRESTLIITHHEELKELIARVKHFADVATKNRKYHEKIYKVYSDS
Ga0272425_100224714F021216N/AMKSRMKSNAMRREHHELEKALRNHERSDDDYSNDTFNEHTESISSCDIIKESDERERK
Ga0272425_100224724F008735N/AVSLLIYDESXLSIDDLDSMKEIMIVVHVHALYQTLLSCIQSIFVLLILRYVKKLLESKSDDDSDRICREMNNERRLIVQDLCNDLSYHCKKLRIQLYINXRTENDEREXSNNIMLSNLILKLLHCAKDLNXIFNHTLSELFNSTLIVDQEIVRQLHLSERITRRDFNVXKRCRKCRSFIMSKTRLN
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