NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1002732

Scaffold Ga0272425_1002732


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1002732 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28260
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (29.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F024448Metagenome205Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100273212F036994GAGMIIEADSLVDLLIEEIDYQLVIEADSLVACEREVDRFIDR
Ga0272425_10027328F024448N/AMNMLNDSFASESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIQEFDDHYAKKLITYVIYLNLTVQDHTIDTAFMLITQLNQHQMILEKIXMNKINLVIDMQIDFLRFLNFTLNLKLIVLLTSNKTILKQKSLTFTHILKRSFTIF
Ga0272425_10027329F005901N/ALHSYILINKLFEHLKEIYDELNRNXKCRHKYNALRQADKSFNVFYFNFMKLFNYLDYDNCTLMNNLQNKINNRLQNALSVCSENFTSLTRLRIFLQNVNNKQQVNYQLRSERHTVIVIIIVKVTIVSDKRVATSLSVTTSIINYVKSIIFFTSESARSFIICYTCKISSHLSKNCSQNKINTSAS
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