NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272425_1003124

Scaffold Ga0272425_1003124


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003124 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25240
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003820Metagenome466Y
F017767Metagenome238Y
F020121Metagenome225Y
F023763Metagenome208Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100312411F017767N/AMISMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCD
Ga0272425_100312412F003820N/AMKLFSYLDYNNCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSKRCTVIIKVTVVPDKHVTSLSVTTSITNYVKSTISSISESAKSSIICYICKTFDHLFKNCSQNKINTSASXAFTSCLHEIIISKNKENEKMSFFEDSEAKN
Ga0272425_100312413F023763N/AMISDVIVESRQKLTSTSLMMTQLLSXHEILKIFVIHDHLDRIDRVFKLXSLFLESTNNDFKFFIVDFIVTLDXIMLLQKVSDXMKNFFLIILKENVFEHIVXSINFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSNKEYIFSDETSEQSSYFTIVINESFIEFREI
Ga0272425_100312414F020121GAGMKKLTEHLRDEMLIAQIIYEFNVNLSHHSCSRYFVEDEVXLNAHNLSIAHFVIKLNDCNVDLFKIKRVFENNSLIIKLNLSTFIKIYLIFHVILLNHITSDFLSSQHQKLQELIVIKNDKRFXYVNSILNFKRDKCYNSLLLKYYINXKDHFSTXESFNLLNNCEQALNKYHLVNSVVEESHVLSCMMSQC
Ga0272425_100312418F098340N/AMIKVAVYXTLVKNKKIKIFLLTISEINKALNLVEDFMKLNEMIFVMSLNELKKKLSIVYHDFLNVFNKEKTMQLSLHQSYDHKIELKEES
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.