NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1003349

Scaffold Ga0272425_1003349


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003349 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23853
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_10033495F074201AGGAGGMDRIDIIPTPEACRQIAHLFRAQQADAEALAARAARAIDDLDGRTDADLAPWDHALLTAAFAALYDAESARVLTIQEGLETLGPYANEGLGEGSHDAA
Ga0272425_10033499F008598GGAMADTPRDDIINDDQPTHVTLTTDRVTSDAADALANALHAAGVTVERRAFLPVRGEDAHPWGVLLLAVHGPLLALVRLVAPSTAPVGVAPALATALGVGEYAAPATLQLKADGVFVSIRARDLLDIISVLDGLPARLARLDTRRAERRLIYSEGVWRIDP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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