NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1003687

Scaffold Ga0272425_1003687


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003687 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22046
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (23.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F028367Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100368720F028367AGCAGLKVVSYVIKQIIALKSVLINLLESCNEQXIXSLXFQFKFRFKKLVISSKVIKEIEIISLCKLDKILSKENYFEKSFLIDAHLISQKXSFSLCSLINSDSVIYMIIHSNLVNKVCKKLKIQFISLIKEKLIRDYDEKISKKIITHKILLNLIIESHKELIVSILIADIDHHEVILSKLXMNKNEILLNMQNDVIVFLN
Ga0272425_100368724F002432N/AMTFFYFNKEFHLRMSFNSDTTDYKTTCEXFKARKTDDIIIQMKELLSFDHQQLKKMKLIIEVQINKHRXNVTYKVDNXVXLSFRNIKTTRLCKNLKDKQLDSYQITVKVSIFYHLCLSVSMKHLHSMFSSKLLXSYSEDSLSEQHSESLRLIIIKDDEHXKIDNIVNFRRYXDQI
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