NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1003699

Scaffold Ga0272425_1003699


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003699 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21965
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F074200Metagenome119Y
F102178Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100369911F016760GGGGGMRVPNGIKRAARATGRGVYILAVPKTVRRSTDELRRVEMSPALGLVLRLTALLVLAGTVLAVHAVGHPLLGLARAALLLVGAVVMLALSGALAPQGRLLGRLLLVYAKRESARKGLTWRGRLFRVLARRLEPATSGKEKGKTNDRQR
Ga0272425_10036995F102178GGAGMAHATQPLPAAAAPAPSRARALVGTVARVTYLYLLGGGIGYLALTVVSRDIALMGAGALLVLYGAALSKALQRQAPSDASKRGTDGAQ
Ga0272425_10036996F074200AGGGGGMARNSQTALYINDPVKIVAGVFTVRQAIYVAGIVLFTYGLINATSRLPYGQSGLGQLHLLLIVGVPALLALLVVTFAGSGTVEPYARQLTGYLWRTTLALPRRLAYRAARLVRRTPAPVYGPVLNDGPGRVADADAATTGAEHAPRATAIRALPAPYVAPVLMTTPVAQTQRARLLAWLAAHPCVTDEEIAEGAGMNPSAARPRRRELVEAGLVRKVDLDGRTRAGRRAARWAVVGTLGEVARG
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